Dear all,
Greetings!
I am currently attempting to generate prmtop and prmcrd files from a PDB file of a protein containing a CDH2 zinc finger domain using LEaP. I intended to load the ZAFF.prep and ZAFF.frcmod files, but discovered that the CDH2 zinc finger force field parameters were not included.
I would like to inquire whether AMBER can obtain the required zinc force field parameter information by providing only the PDB file of a protein containing the CDH2 zinc finger domain. If this is possible, could you please provide the specific steps for this process?
I look forward to your reply and appreciate your time and assistance with my inquiry.
Best regards,
Miaomiao Qi Graduate Student Peking University mmqi.stu.pku.edu.cn
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Received on Sat Oct 05 2024 - 19:00:01 PDT
