Amber Archive Apr 2013: by messages with attachments

[AMBER] error in perl script (mm_pbsa.pl) for binding energy kureeckal ramesh (Mon Apr 01 2013 - 02:42:09 PDT)
1. binding_energy.mmpbsa (8402 bytes)
2. binding_energy.log (1467 bytes)
[AMBER] Help with GB-OBC calculations Kamakshi (Tue Apr 02 2013 - 04:34:06 PDT)
1. ramachandran_plot.png (50449 bytes)
Re: [AMBER] Problem with order parameter calculation in PTRAJ anu chandra (Fri Apr 05 2013 - 22:48:33 PDT)
1. trajin_S2_NH (261 bytes)
2. S2_NH.log (5146 bytes)
3. ired_NH.vec (491 bytes)
4. trajin_S2_sidechain (268 bytes)
5. S2_sidechain.log (5180 bytes)
6. ired_sidechain.vec (491 bytes)
[AMBER] problem in loading 5'terminal phosphate group of tRNA N Nandi (Sun Apr 07 2013 - 22:18:29 PDT)
1. loading_trna.doc (28672 bytes)
[AMBER] Fwd: xleap problem suresh satpati (Sun Apr 07 2013 - 22:52:40 PDT)
1. 5.pdb (324731 bytes)
[AMBER] Problem with order parameter calculation in PTRAJ anu chandra (Mon Apr 08 2013 - 01:56:36 PDT)
1. trajin_S2_NH (261 bytes)
2. S2_NH.log (5146 bytes)
3. ired_NH.vec (491 bytes)
4. trajin_S2_sidechain (268 bytes)
5. S2_sidechain.log (5180 bytes)
6. ired_sidechain.vec (491 bytes)
[AMBER] problem in loading 5'terminal phosphate group of tRNA N Nandi (Mon Apr 08 2013 - 04:14:58 PDT)
1. problem_in_loading_tRNA.doc (30720 bytes)
[AMBER] Amber installation problems Donato Pera (Wed Apr 10 2013 - 06:48:39 PDT)
1. amber.txt (35585 bytes)
Re: [AMBER] Error: A residue defined as a "fast 3-point water" is not defined by a triangle of three bonds using CHARMM 27 FF converted by CHAMBER program dbaogen (Fri Apr 12 2013 - 03:23:44 PDT)
1. _MMPBSA_complex_pb.mdout.0 (6862 bytes)
[AMBER] ff atom types Urszula Uciechowska (Fri Apr 12 2013 - 06:12:36 PDT)
1. BAL.mol2 (1453 bytes)
Re: [AMBER] sander not installed Anna Bauß (Mon Apr 15 2013 - 01:34:48 PDT)
1. anna_bauss.vcf (348 bytes)
[AMBER] tleap cannot create topology and coordinate files javier alejandro rendon carrillo (Mon Apr 15 2013 - 14:22:52 PDT)
1. ADN.pdb (80183 bytes)
[AMBER] Whirling ssDNA like a helicopter (Movie attached) Hoshin Kim (Mon Apr 15 2013 - 15:23:05 PDT)
1. DNA_Helicopter.wmv (595558 bytes)
[AMBER] AmberTools12 re-installation test log file Saugata Hazra (Tue Apr 16 2013 - 14:46:11 PDT)
1. 04-15_13-41-49.log (90825 bytes)
2. 04-15_13-41-49.diff (14237 bytes)
[AMBER] carbohydrate-GLYCAM 06-cellulose Iβ Rasha Alqus (Mon Apr 22 2013 - 09:14:49 PDT)
1. ja0257319_s1.cif (26735 bytes)
2. output.pdb (14160 bytes)
[AMBER] Question for AMBER input files 陶晓芳 (Wed Apr 24 2013 - 18:19:01 PDT)
1. PE.tar.bz2 (287277 bytes)

Amber Archive Apr 2013 by messages with attachments