Hey Jonathan,
did you obtain and install the amber12 program package
(
http://ambermd.org/#Amber12)? sander is included in this one and
doesn't come with the tools.
Greetings,
Anna
Am 15.04.2013 09:50, schrieb Jonathan Saboury:
> Hello, I was doing this tutorial "
> http://ambermd.org/tutorials/basic/tutorial1/section3.htm" and had problems
> running sander, seems like it is not installed. I installed AmberTools12.
>
> I tried the command "$AMBERHOME/bin/sander -i polyAT_vac_init_min.in -o
> polyAT_vac_init_min.out -c polyAT_vac.inpcrd -p polyAT_vac.prmtop -r
> polyAT_vac_init_min.rst"
>
> and got this error "bash: /home/jonathan/Programs/amber12/bin/sander: No
> such file or directory"
>
> any idea why it was not installed?
>
> Thanks!
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Received on Mon Apr 15 2013 - 02:00:02 PDT
