Amber Archive Mar 2002: By Thread

Re: AMBER 99 Felipe Pineda (Fri Mar 01 2002 - 00:25:27 PST)
(no subject) deepak rangaswamy (Fri Mar 01 2002 - 03:00:51 PST)
Release of Amber, version 7 (fwd) amber mail account (Sun Mar 03 2002 - 15:13:26 PST)
- Re: Release of Amber, version 7 (fwd) SPEROLEEM_at_aol.com (Tue Mar 05 2002 - 14:16:27 PST)
- a question about .in files Vlad Cojocaru (Wed Mar 06 2002 - 07:00:02 PST)
  - Re: a question about .in files Bill Ross (Wed Mar 06 2002 - 11:16:53 PST)
- leap calculation Itziar Maestre Asenjo (Wed Mar 06 2002 - 09:43:44 PST)
concentrated system Jerry wu (Mon Mar 04 2002 - 00:36:21 PST)
carnal and union Pascal Bonnet (Mon Mar 04 2002 - 01:00:20 PST)
carnal and union: solution Pascal Bonnet (Mon Mar 04 2002 - 04:33:17 PST)
Re: leap calculation (loadamberprep) Bill Ross (Wed Mar 06 2002 - 11:22:33 PST)
Are the programs sander and gibbs in Amber 7 parallel? ramon kleber da rocha (Wed Mar 06 2002 - 11:28:01 PST)
converting some files Vlad Cojocaru (Thu Mar 07 2002 - 03:00:00 PST)
dG of wild type/mutant FyD (Thu Mar 07 2002 - 03:26:31 PST)
statistical analysis of MD trajectories Jake Isaacs (Thu Mar 07 2002 - 09:24:03 PST)
parameter estimation Vlad Cojocaru (Thu Mar 07 2002 - 10:32:25 PST)
- Fw: parameter estimation Lepsa (Fri Mar 08 2002 - 01:52:50 PST)
- new units Vlad Cojocaru (Fri Mar 08 2002 - 06:35:46 PST)
  - rdparm error message Rukman Hertadi (Sun Mar 10 2002 - 00:46:53 PST)
  - Europium force field parms Peter Gannett (Sun Mar 10 2002 - 12:07:44 PST)
  - Re Europium force field parms Fabrice Yerly (Sun Mar 10 2002 - 23:32:59 PST)
    - scaleCharges Vojta Klusak (Mon Mar 11 2002 - 01:45:54 PST)
    - Re: scaleCharges David Case (Mon Mar 11 2002 - 09:37:51 PST)
    - limit of written files with ptraj Carles Ferrer (Mon Mar 11 2002 - 12:54:16 PST)
    - combining trajectory file Rukman Hertadi (Tue Mar 12 2002 - 01:48:49 PST)
    - Re: combining trajectory file Natasja Brooijmans (Tue Mar 12 2002 - 08:00:38 PST)
    - Re: combining trajectory file CUI, Guanglei (Tue Mar 12 2002 - 08:24:44 PST)
    - Re: combining trajectory file Thomas Cheatham (Tue Mar 12 2002 - 10:30:51 PST)
    - Re Europium force field parms Marc Baaden (Mon Mar 11 2002 - 03:52:40 PST)
choosing a forcefield nepenthes_at_vplaces.net (Thu Mar 07 2002 - 19:51:25 PST)
high electrostatic energy thenmalar rathinavelan (Thu Mar 07 2002 - 21:13:40 PST)
Re: questions about resp X. Tan (Tue Mar 12 2002 - 13:02:22 PST)
question on Gibbs calculation X. Tan (Tue Mar 12 2002 - 13:50:24 PST)
help please :) Richard Kho (Fri Mar 15 2002 - 16:59:23 PST)
Post-doctoral position Wolfe, Jennifer (Mon Mar 18 2002 - 08:33:11 PST)
Dual AMD motherboards jim caldwell (Mon Mar 18 2002 - 15:47:12 PST)
- RE: Dual AMD motherboards Demchuk, Eugene (Mon Mar 18 2002 - 16:52:55 PST)
  - RE: Dual AMD motherboards jim caldwell (Mon Mar 18 2002 - 18:04:24 PST)
  - Dual AMD ASUS A7M266-D Solved jim caldwell (Mon Mar 18 2002 - 18:37:19 PST)
Re: Amber shailendra singh (Mon Mar 18 2002 - 21:57:48 PST)
minimization problem Uwe Richter (Tue Mar 19 2002 - 04:22:06 PST)
- Re: minimization problem Andreas Svrcek-Seiler (Tue Mar 19 2002 - 05:33:19 PST)
- carnal RST output format Pascal Bonnet (Tue Mar 19 2002 - 06:12:31 PST)
  - Re: carnal RST output format Bill Ross (Tue Mar 19 2002 - 11:32:36 PST)
    - Re: carnal RST output format Andy Purkiss (Tue Mar 19 2002 - 12:45:00 PST)
    - Amber6 & ES40 incompatability Sanjeev B.S. (Tue Mar 19 2002 - 23:01:17 PST)
    - building bcyd with tleap Itziar Maestre Asenjo (Wed Mar 20 2002 - 02:51:47 PST)
    - MM-PBSA philosophy Michal Otyepka (Wed Mar 20 2002 - 04:34:24 PST)
    - Re: MM-PBSA philosophy Felipe Pineda (Wed Mar 20 2002 - 06:25:05 PST)
    - Re: MM-PBSA philosophy David Case (Wed Mar 20 2002 - 08:10:05 PST)
    - Question about obtaining amber! Peter Fojan (Thu Mar 21 2002 - 05:19:59 PST)
    - MS program ... A. Ababou (Sat Mar 23 2002 - 08:21:15 PST)
    - Re: MS program ... Samantha (Sat Mar 23 2002 - 09:09:14 PST)
    - nmropt problem in AMBER7 Rukman Hertadi (Mon Mar 25 2002 - 01:51:22 PST)
    - Resending: Medicinal and Computational Chemistry Job Market Computational Chemistry Job Market (Mon Mar 25 2002 - 12:05:03 PST)
    - mdcrd to arc Ian R Bates (Sat Mar 23 2002 - 08:46:21 PST)
    - atom connection, .off file problem Uwe Richter (Wed Mar 20 2002 - 05:48:07 PST)
- Still no bench Stéphane Teletchéa (Tue Mar 19 2002 - 07:17:45 PST)
- creating a unit wth xleap Marcela Madrid (Tue Mar 19 2002 - 11:07:30 PST)
  - Re: creating a unit wth xleap Bill Ross (Tue Mar 19 2002 - 11:43:25 PST)
Re: polarizabilities Lepsa (Tue Mar 26 2002 - 01:12:09 PST)
- Polarizabilities, charge scaling and ions Michal Otyepka (Wed Mar 27 2002 - 01:42:29 PST)
- s-matrix format and ftnmr Shixiang Yan (Wed Mar 27 2002 - 13:49:50 PST)
- What is the atoms limit for Amber 7? William Wei (Wed Mar 27 2002 - 14:19:34 PST)
  - Re: What is the atoms limit for Amber 7? David Case (Wed Mar 27 2002 - 15:45:44 PST)
  - sulfate and sulfamate parameters jeff dyason (Wed Mar 27 2002 - 20:28:55 PST)
  - AMBER 5 Monica (Wed Mar 27 2002 - 20:29:12 PST)
  - change topology Michal Otyepka (Thu Mar 28 2002 - 00:44:38 PST)
    - Re: change topology Bill Ross (Thu Mar 28 2002 - 01:45:49 PST)
    - Magnesium as a DNA counterion in AMBER 6.0 Mike Keller (Thu Mar 28 2002 - 07:31:29 PST)
    - Amber6, GB (Memory, MATOM, nmr.h)/Folding (mutation) IAF (Thu Mar 28 2002 - 09:56:04 PST)
    - Re: Amber6, GB (Memory, MATOM, nmr.h)/Folding (mutation) David Case (Thu Mar 28 2002 - 10:40:16 PST)
    - a little bit confused with leap-frog algorithm... Margaret Cheung (Thu Mar 28 2002 - 13:08:40 PST)
    - Re: a little bit confused with leap-frog algorithm... David Case (Thu Mar 28 2002 - 17:52:38 PST)
    - Re: a little bit confused with leap-frog algorithm... Margaret Cheung (Sat Mar 30 2002 - 19:35:36 PST)
    - compiling error. Margaret Cheung (Sat Mar 30 2002 - 23:26:53 PST)
    - Re: compiling error. Carlos Simmerling (Sun Mar 31 2002 - 07:24:19 PST)
    - Re: compiling error. Margaret Cheung (Sun Mar 31 2002 - 20:44:07 PST)
    - Re: compiling error. Bill Ross (Sun Mar 31 2002 - 23:30:24 PST)
    - convergence of MD simulations Sue Heavner (Sat Mar 30 2002 - 15:02:16 PST)
    - Problem with atom type rhertadi_at_bio.titech.ac.jp (Thu Mar 28 2002 - 13:55:33 PST)
    - Re: Problem with atom type Bill Ross (Thu Mar 28 2002 - 16:14:16 PST)
Hydrogen bond energy using Anal A.Madhumalar (Tue Mar 26 2002 - 02:23:34 PST)
One question about how to use the amber Zhe SUN (Tue Mar 26 2002 - 04:49:35 PST)
secondary structure Ian R Bates (Tue Mar 26 2002 - 11:49:48 PST)
problems using Link John Finke (Tue Mar 26 2002 - 12:39:59 PST)
GB model and belly dkon_at_email.arizona.edu (Tue Mar 26 2002 - 13:46:40 PST)
- Re: GB model and belly David Case (Tue Mar 26 2002 - 15:07:33 PST)
More GB/Belly dkon_at_email.arizona.edu (Tue Mar 26 2002 - 14:00:23 PST)

Amber Archive Mar 2002 By Thread