Amber Archive May 2001 by author

79 messages: Starting Tue May 01 2001 - 06:58:13 PDT, Ending Thu May 31 2001 - 19:06:20 PDT
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A.Madhumalar
- Minimization inputs in AMBER6!! (Thu May 10 2001 - 10:09:27 PDT)
Adrian E. Roitberg
- parameters (Mon May 07 2001 - 11:00:55 PDT)
Aldo Jongejan
- ANAL (Amber6.0) (Wed May 02 2001 - 06:01:31 PDT)
Amesh Patel
- escaping atoms.... (Wed May 09 2001 - 07:36:30 PDT)
Andreas Svrcek-Seiler
- Re: topology description (Tue May 08 2001 - 08:18:12 PDT)
- AMBER parameters (Tue May 01 2001 - 06:58:13 PDT)
Andrew Aird
- peek_ewald_inpcrd (Mon May 07 2001 - 09:48:59 PDT)
Artem Mamonov
- tree names in group spec. (Thu May 10 2001 - 16:49:02 PDT)
arubin_at_unmc.edu
- CUT in AMBER6 (Mon May 21 2001 - 15:53:41 PDT)
- RMSD calculation (Tue May 15 2001 - 12:43:46 PDT)
Bill Ross
- Re: add counterions (Wed May 30 2001 - 09:58:53 PDT)
- Re: problem in xleap (Wed May 30 2001 - 09:50:17 PDT)
- Re: AMBER compilation woes (Tue May 22 2001 - 00:01:52 PDT)
- Re: f2c.h (Mon May 21 2001 - 15:10:56 PDT)
- Re: CCL:Date: Wed, 16 May 2001 13:47:15 +0200 (Wed May 16 2001 - 12:59:11 PDT)
- Re: RMSD calculation (Tue May 15 2001 - 14:49:39 PDT)
- Re: Residue wise RMSD using carnal (Sun May 13 2001 - 10:28:05 PDT)
- Re: tree names in group spec. (Thu May 10 2001 - 18:37:01 PDT)
- Re: escaping atoms.... (Wed May 09 2001 - 15:34:27 PDT)
- Re: topology description (Wed May 09 2001 - 15:27:01 PDT)
- Re: addions in leap (Fri May 04 2001 - 07:23:44 PDT)
Carlos Simmerling
- Re: RMSD calculation (Tue May 15 2001 - 16:13:47 PDT)
Christian Pilger
- summary: titratable amino acids and counter ions (Wed May 30 2001 - 05:23:30 PDT)
- titratable amino acids and counter ions (Mon May 28 2001 - 04:49:36 PDT)
darden
- Re: Ewald error estimation (Mon May 21 2001 - 13:58:17 PDT)
- Re: peek_ewald_inpcrd (Mon May 07 2001 - 14:01:08 PDT)
David Konerding
- Re: Amber, VMD and visualization (Thu May 24 2001 - 19:03:13 PDT)
Elizabeth K. White
- machine/OS on which make test.all crashes in AMBER (Thu May 31 2001 - 17:51:22 PDT)
- make test.all crashes in AMBER (Thu May 31 2001 - 14:48:12 PDT)
- AMBER compilation woes (Mon May 21 2001 - 22:12:04 PDT)
Fabrizio Giordanetto
- phosphotyrosine (Tue May 15 2001 - 08:34:51 PDT)
Guo, Jianxin
- sorry for the virus. (Thu May 10 2001 - 11:52:55 PDT)
Haitao Dong
- matrix diagonalizing subroutines (Mon May 21 2001 - 11:45:03 PDT)
- matrix diagonalizing subroutines (Mon May 21 2001 - 11:15:16 PDT)
Hermann von Grafenstein
- Amber, VMD and visualization (Thu May 24 2001 - 17:32:44 PDT)
Jarrod Smith
- Re: Amber 6.0 on LINUX with absoft (Mon May 14 2001 - 07:22:42 PDT)
- Re: sander6/Linux compiled with pgf77 + mpipro (Thu May 03 2001 - 12:41:06 PDT)
- sander6/Linux compiled with pgf77 + mpipro (Thu May 03 2001 - 08:11:16 PDT)
- Wallclock on Intel/Linux sander (Tue May 01 2001 - 12:48:36 PDT)
jim caldwell
- Re: make test.all crashes in AMBER (Thu May 31 2001 - 15:29:52 PDT)
- Peter Kollman memorial (Wed May 30 2001 - 16:25:17 PDT)
- Peter Kollman (Fri May 25 2001 - 11:10:55 PDT)
- Important Address change (Wed May 02 2001 - 11:42:04 PDT)
Jithesh P.V.
- Charges for methylated residue (Mon May 28 2001 - 21:45:46 PDT)
Krishna Bisetty
- average structure (Wed May 16 2001 - 03:33:41 PDT)
liz
- Resp (Wed May 09 2001 - 12:14:32 PDT)
Marcela Madrid
- box of water (Wed May 16 2001 - 15:04:01 PDT)
Marjoribanks, Andrew G
- AMBER enquiry (Tue May 15 2001 - 10:21:03 PDT)
Martin Crnugelj
- ewald bomb (Wed May 16 2001 - 00:43:13 PDT)
Michael Cooney
- carnal error with crd files stripped of waters (Fri May 11 2001 - 13:52:47 PDT)
Michal Otyepka
- Re: titratable amino acids and counter ions (Wed May 30 2001 - 04:50:10 PDT)
Miyashita, Osamu
- sander_classic: bond energy problem (Mon May 07 2001 - 14:28:03 PDT)
Monica
- problem in xleap (fwd) (Wed May 30 2001 - 05:35:06 PDT)
- problem in xleap (Wed May 30 2001 - 04:15:00 PDT)
- compilation on linux6 (Wed May 23 2001 - 05:35:11 PDT)
- Query (Sat May 19 2001 - 05:09:24 PDT)
Nada Spackova
- Re: Residence time (Thu May 17 2001 - 06:24:07 PDT)
Nathalie Duclert
- GDP/GTP (Mon May 21 2001 - 06:02:12 PDT)
Ngai Ling Ida Ma
- parameters for neutral amino acids (Mon May 28 2001 - 22:42:45 PDT)
Nicolas Grima
- Re: compilation on linux6 (Wed May 23 2001 - 05:17:56 PDT)
Osmar Norberto de Souza
- f2c.h (Mon May 21 2001 - 13:20:38 PDT)
Rino Ragno
- (no subject) (Wed May 16 2001 - 04:47:15 PDT)
samantha hughes
- Re: Amber, VMD and visualization (Thu May 24 2001 - 22:34:41 PDT)
- Re: carnal error with crd files stripped of waters (Mon May 14 2001 - 01:20:17 PDT)
Sanjeev B.S.
- Ewalb bomb on SP3 (Sat May 05 2001 - 12:38:23 PDT)
- Why does water leak!? (Thu May 03 2001 - 02:07:51 PDT)
Sarah Tschampel
- (no subject) (Thu May 31 2001 - 09:01:09 PDT)
Shixiang Yan
- sander 6 warming up (Thu May 31 2001 - 19:06:20 PDT)
Soonmin Jang
- Amber 6.0 on LINUX with absoft (Mon May 14 2001 - 00:43:16 PDT)
Stephane
- DNA strand flying (Thu May 10 2001 - 08:48:17 PDT)
Troy Bothwell
- ptraj Vector command (Thu May 10 2001 - 15:36:04 PDT)
Troy Wymore
- PSC BIOMEDICAL WORKSHOPS 2001 (Wed May 16 2001 - 10:27:50 PDT)
Victor Anisimov
- protein ionization (Tue May 29 2001 - 03:07:59 PDT)
Warren DeLano
- Re: Amber, VMD and visualization (Thu May 24 2001 - 18:30:00 PDT)
Yanni Wang
- Diffusion constant (Thu May 10 2001 - 02:14:34 PDT)
Yuguang Mu
- parameters forms (Tue May 08 2001 - 01:13:32 PDT)
Zhangxd
- the program and references (Tue May 15 2001 - 08:33:01 PDT)
- question about mm-pbsa (Mon May 07 2001 - 05:32:26 PDT)
- question about mm-pbsa (Wed May 02 2001 - 13:02:50 PDT)