Re: carnal error with crd files stripped of waters

From: samantha hughes <>
Date: Mon 14 May 2001 08:20:17 +0000

Hi Michael,

What do you use to strip the waters ? Carnal or RDParm/PTRAJ ?


Michael Cooney wrote:
> Dear AMBER users,
> When I run carnal to analyze distances/angles/torsions on a large mdcrd
> file, I like to strip the trajectory of waters in order to speed up the
> carnal run, but when I do this I get the following error at the end of my
> output file:
> allmdnowat.crd: too many numbers on box line for mdcrd format -
> bad coord file or carnal bug
> Has anyone else had this problem, and if so, is there an easy way to
> modify the stripped mdcrd file's box line so carnal will like it?
> Thanks very much for your help.
> Sincerely,
> Michael Cooney
> Dept. of Biochemistry and Molecular Biology
> The University of Georgia
> Athens, GA, USA
Received on Mon May 14 2001 - 01:20:17 PDT
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