Amber Archive Feb 2025 by author

58 messages: Starting Sun Feb 02 2025 - 12:30:02 PST, Ending Fri Feb 21 2025 - 04:30:02 PST
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Adrian Roitberg via AMBER
- Re: [AMBER] Amber and Martini (Thu Feb 20 2025 - 07:59:57 PST)
angad sharma via AMBER
- [AMBER] Conversion factor in LJ parameters for RISM (Thu Feb 06 2025 - 09:15:55 PST)
- [AMBER] Conversion factor in LJ parameters for RISM (Mon Feb 03 2025 - 23:37:19 PST)
- [AMBER] Incorporating constant pressure in input file for 3drsim calcualtion (Sun Feb 02 2025 - 12:13:37 PST)
as0200264 via AMBER
- [AMBER] Issue of temperature fluctuation in RAMD on GPU & possible solution (Mon Feb 03 2025 - 22:39:50 PST)
Carlos Simmerling via AMBER
- Re: [AMBER] Regarding Dihedral Restraints in MD simulation (Wed Feb 19 2025 - 04:14:46 PST)
- Re: [AMBER] Regarding Dihedral Restraints in MD simulation (Tue Feb 18 2025 - 09:15:17 PST)
David A Case via AMBER
- Re: [AMBER] Implementig AMBER 24 (Mon Feb 17 2025 - 19:48:18 PST)
- Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations (Mon Feb 17 2025 - 19:43:47 PST)
- Re: [AMBER] addles.in for LES (Thu Feb 13 2025 - 06:47:04 PST)
- Re: [AMBER] Installation error on Mac M2 (Wed Feb 12 2025 - 06:55:05 PST)
- Re: [AMBER] Uranyl Simulation Discrepancy Between CPU and GPU (Tue Feb 11 2025 - 07:13:16 PST)
- Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations (Mon Feb 10 2025 - 07:37:20 PST)
- Re: [AMBER] M3 Mac struggling to install Amber (Mon Feb 10 2025 - 07:30:52 PST)
- Re: [AMBER] HPO4- and PO4- (Mon Feb 10 2025 - 07:16:03 PST)
- Re: [AMBER] The problem with reading topology file in LES with restraints simulating (Mon Feb 03 2025 - 10:22:58 PST)
- Re: [AMBER] Scaling parameters in igb=8 (Mon Feb 03 2025 - 10:19:36 PST)
David A Case via AMBER-Developers
- Re: [AMBER-Developers] [AMBER] M3 Mac struggling to install Amber (Mon Feb 10 2025 - 12:06:43 PST)
Debarati DasGupta via AMBER
- [AMBER] RNA aptamer setup (Tue Feb 11 2025 - 09:11:45 PST)
Devid Sahu via AMBER
- [AMBER] Regarding Dihedral Restraints in MD simulation (Mon Feb 17 2025 - 22:03:51 PST)
Dezsö Babai via AMBER
- [AMBER] ReaxFF/AMBER inconsistency (Wed Feb 05 2025 - 09:23:45 PST)
Dr. Anselm Horn via AMBER
- Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations (Tue Feb 18 2025 - 03:00:34 PST)
Feng Pan via AMBER
- Re: [AMBER] Question about Wall Restraints Performance in ABMD Simulations (Tue Feb 18 2025 - 10:05:06 PST)
Gabriel Ernesto Jara via AMBER
- Re: [AMBER] Help with MMPBSA.PY Pairwise Decomposition Results (Thu Feb 20 2025 - 09:12:08 PST)
- Re: [AMBER] HPO4- and PO4- (Mon Feb 17 2025 - 05:42:59 PST)
- Re: [AMBER] Help with MMPBSA.PY Pairwise Decomposition Results (Mon Feb 17 2025 - 05:27:45 PST)
- Re: [AMBER] HPO4- and PO4- (Mon Feb 10 2025 - 10:24:43 PST)
- [AMBER] HPO4- and PO4- (Fri Feb 07 2025 - 08:56:44 PST)
Ibrahim Said via AMBER
- [AMBER] Changing the number of ntwx (Wed Feb 19 2025 - 00:30:49 PST)
Iglika Lessigiarska via AMBER
- Re: [AMBER] Amber metal ions protein multiple chains (Tue Feb 04 2025 - 04:16:09 PST)
INDAH LANGITASARI via AMBER
- [AMBER] Installation error on Mac M2 (Wed Feb 12 2025 - 01:48:43 PST)
- [AMBER] Installation error on Mac M2 (Wed Feb 12 2025 - 01:43:59 PST)
- [AMBER] Installation error on Mac M2 (Wed Feb 12 2025 - 01:33:48 PST)
James Kress via AMBER
- Re: [AMBER] Amber and Martini (Thu Feb 20 2025 - 12:00:07 PST)
- [AMBER] Amber and Martini (Wed Feb 19 2025 - 16:52:55 PST)
Jones De Andrade via AMBER
- Re: [AMBER] HPO4- and PO4- (Mon Feb 10 2025 - 10:39:19 PST)
KLEIN Jordan via AMBER
- [AMBER] Uranyl Simulation Discrepancy Between CPU and GPU (Tue Feb 04 2025 - 04:42:03 PST)
Li, Zhen via AMBER
- Re: [AMBER] Issues with 12-6-4 (Fri Feb 14 2025 - 11:35:56 PST)
Luke Allfree via AMBER
- [AMBER] M3 Mac struggling to install Amber (Mon Feb 10 2025 - 01:18:33 PST)
May Kevin via AMBER
- Re: [AMBER] Position restraints in NPT (Tue Feb 11 2025 - 19:41:39 PST)
MD FAHIM NEWAZ via AMBER
- [AMBER] Calculating Viscosity. (Mon Feb 17 2025 - 01:14:47 PST)
Nell Karpinski via AMBER
- [AMBER] Issues with 12-6-4 (Fri Feb 14 2025 - 11:29:03 PST)
Pooja Pooja via AMBER
- [AMBER] Clarification on Conversion of Lennard-Jones Parameters for RISM Calculations (Mon Feb 10 2025 - 22:51:52 PST)
Pradip Si via AMBER
- Re: [AMBER] Generating GAFF for Conformational Polymorphs (Mon Feb 03 2025 - 10:54:53 PST)
Ray Luo via AMBER
- Re: [AMBER] Help with MMPBSA.PY Pairwise Decomposition Results (Tue Feb 18 2025 - 10:33:16 PST)
Rinsha Chk via AMBER
- [AMBER] Metal nano cluster simulation (Sun Feb 09 2025 - 22:49:22 PST)
Rosa Teijeiro Juiz via AMBER
- [AMBER] parameters for non canonical amino acid with silicon (Fri Feb 21 2025 - 04:03:38 PST)
Ross Walker via AMBER
- [AMBER] Initial RTX5080 Numbers (Wed Feb 12 2025 - 13:01:21 PST)
Solen Ekesan via AMBER
- Re: [AMBER] Regarding Dihedral Restraints in MD simulation (Tue Feb 18 2025 - 13:34:40 PST)
Sonti Siddharth via AMBER
- [AMBER] Extracting bias potential information from AMBER metadynamics (Thu Feb 13 2025 - 11:50:13 PST)
Tej Tarun Sharma 2310225 via AMBER
- [AMBER] Scaling parameters in igb=8 (Sun Feb 02 2025 - 21:47:57 PST)
TUSHAR GUPTA via AMBER
- Re: [AMBER] Issue with Water Box Breaking in CUDA MD Simulations (Sun Feb 16 2025 - 21:48:15 PST)
- [AMBER] Issue with Water Box Breaking in CUDA MD Simulations (Mon Feb 10 2025 - 04:46:07 PST)
VERONICA MARTIN HERNANDEZ via AMBER
- Re: [AMBER] Implementig AMBER 24 (Tue Feb 18 2025 - 04:24:28 PST)
- [AMBER] Implementig AMBER 24 (Mon Feb 17 2025 - 09:51:46 PST)
Кунина, Елизавета Игоревна via AMBER
- [AMBER] addles.in for LES (Thu Feb 06 2025 - 23:26:27 PST)
- [AMBER] The problem with reading topology file in LES with restraints simulating (Mon Feb 03 2025 - 04:35:26 PST)
孟令屾 via AMBER
- [AMBER] Question about Wall Restraints Performance in ABMD Simulations (Fri Feb 14 2025 - 02:31:27 PST)