[AMBER] Metal nano cluster simulation

From: Rinsha Chk via AMBER <amber.ambermd.org>
Date: Mon, 10 Feb 2025 12:19:22 +0530

Hello,
I am trying to perform an MD simulation of a protein with a neutral metal
nanocluster. The metals are in the zero oxidation state. I tried to
parametrize the cluster, but AMBER is treating the metal in its +1
oxidation state.

I am seeking guidance to perform this simulation correctly. If anyone can
help, I would greatly appreciate it.

---
Thanks and Regards,
Rinsha C H
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Received on Sun Feb 09 2025 - 23:00:02 PST
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