Thank you Dan for reply. Actually I wanted to use curves+ and canion tool
to analyse ion distribution around DNA. I read curves+ user manual and
there they have said amber trajectory in .trj format and amber topology
file is needed as inputs. No further explanation is given about .trj file
in curves+ manual. So to be precise I actually don't know what they mean by
amber trajectory in .trj format. I have not yet came to solve this problem
any help in the right direction is very appreciated.
Once again thank you for replying
On Fri 15 Jun, 2018, 10:27 PM Daniel Roe, <daniel.r.roe.gmail.com> wrote:
> By .trj do you mean the Gromacs trr format?
>
> If so, just do:
>
> cpptraj -p <amber topology> -y <amber trajectory> -x output.trr
>
> -Dan
>
> On Fri, Jun 15, 2018 at 9:02 AM, ATUL KUMAR <atul44_sit.jnu.ac.in> wrote:
> > Dear amber users,
> > I want to convert my amber trajectory (md1.mdcrd) to .trj trajectory
> > format. Can anyone help me with that?
> > Your help is highly appreciated.
> >
> > *Atul Kuamr jaiswal*
> > Research Scholar
> > School of Computational and Integrative Sciences
> > Centre for Computational Biology and Bioinformatics (CCBB)
> > JNU,New Delhi
> > India.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Fri Jun 15 2018 - 22:30:02 PDT
