You need to use autoimage.
On Fri, Jun 15, 2018 at 6:59 AM, 陈金峰 <201612095.mail.sdu.edu.cn> wrote:
>
> Dear amber users:
> I have completed a simple simulation, but the protein get out the box
> in the
> trajectory output file.
> I have tried to use the center command in the cpptraj:
> center :1-129
> or
> center :1-129 origin
> image origin center familiar
> But neither of them worked, I just want to get a trajectory that all
> atoms
> in one box unit. How can i achieve that?
> Any suggestion would be appreciated
> Thank you.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 15 2018 - 10:00:04 PDT
