[AMBER] Deal with trajectoy PBC

From: 陈金峰 <201612095.mail.sdu.edu.cn>
Date: Fri, 15 Jun 2018 21:59:39 +0800

   Dear amber users:
   I have completed a simple simulation, but the protein get out the box in the
   trajectory output file.
   I have tried to use the center command in the cpptraj:
   center :1-129
   center :1-129 origin
   image origin center familiar
   But neither of them worked, I just want to get a trajectory that all atoms
   in one box unit. How can i achieve that?
   Any suggestion would be appreciated
   Thank you.
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Received on Fri Jun 15 2018 - 07:30:02 PDT
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