Dear,
Create a file ptraj.in with following options :
trajin file.mdcrd # the name of the trajectory
image center
trajout ptraj.out # the name of the output
then from the terminal run :
$AMBERHOME/bin/cpptraj file.prmtop ptraj.in
you will be getting your proccesed output, of you which you can watch the
trajectory by means of visualization programs such as VMD ...
Best Regards,
Emanuele
2018-06-15 14:02 GMT+01:00 ATUL KUMAR <atul44_sit.jnu.ac.in>:
> Dear amber users,
> I want to convert my amber trajectory (md1.mdcrd) to .trj trajectory
> format. Can anyone help me with that?
> Your help is highly appreciated.
>
> *Atul Kuamr jaiswal*
> Research Scholar
> School of Computational and Integrative Sciences
> Centre for Computational Biology and Bioinformatics (CCBB)
> JNU,New Delhi
> India.
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Received on Fri Jun 15 2018 - 06:30:03 PDT
