Re: [AMBER] dna

From: <monica.imtech.res.in>
Date: Wed, 23 Jun 2010 21:10:18 +0530 (IST)

> On Wed, Jun 23, 2010, monica.imtech.res.in wrote:
>>
>> i have the pdb file of a dna sequence made from nab (amber 9)
>
> The easiset and best thing to do is to upgrade to the current version of
> AmberTools (which contains nab).
>
>>
>> but i'm not able to generate parameter files for it under tleap , due to some
>> atom name mismatch.
>> (i guess)
>
> It is *very* helpful if you post the commands you used, and the exact output
> you got. Just saying "due to some atom name mismatch (i guess)" doesn't allow
> us to offer as much help as we would like.
>
> ....dac
>
>
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>

sir
nab version is updated and no problem during pdb generation.
sending u the files :
the only i'm facing is that no parameters are being generated with these files .
plz help me out
thanx a lot
monica


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Received on Wed Jun 23 2010 - 09:00:04 PDT
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