Re: [AMBER] dna

From: case <>
Date: Wed, 23 Jun 2010 10:02:42 -0400

On Wed, Jun 23, 2010, wrote:
> i have the pdb file of a dna sequence made from nab (amber 9)

The easiset and best thing to do is to upgrade to the current version of
AmberTools (which contains nab).

> but i'm not able to generate parameter files for it under tleap , due to some
> atom name mismatch.
> (i guess)

It is *very* helpful if you post the commands you used, and the exact output
you got. Just saying "due to some atom name mismatch (i guess)" doesn't allow
us to offer as much help as we would like.


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Received on Wed Jun 23 2010 - 07:30:07 PDT
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