Re: [AMBER] simulating in urea

From: <monica.imtech.res.in>
Date: Wed, 23 Jun 2010 20:54:15 +0530 (IST)

> On Wed, Jun 23, 2010, monica.imtech.res.in wrote:
>
>> solvateBox peptide 8MUREABOX 12.0 0.8
>
> You need "UREABOX", not "8MUREABOX". You can always use the "desc" command
> in leap to see what units are loaded.
>
> ....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>

 sir
i actually did UREABOX also. but still the same problem.
i gave command:
solvatebox mol1 UREABOX 10

and getting :
solvateBox: Argument #2 is type String must be of type: [unit]
usage: solvateBox <solute> <solvent> <buffer> [iso] [closeness]

just for the trial sake rest other solvent boxes i tried and they are being added.
any specific thing with urea.i loaded the frcmod.urea file also

plz help me out with this
thanx



_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jun 23 2010 - 08:30:03 PDT
Custom Search