Thank you, it fixed it.
Deepa
Quoting Thomas Cheatham <tec3.utah.edu>:
>
>> Thank you for your suggestion but even after making the change I
>> still got the
>> segmentation fault. Based on AMBER archive messages I also removed radial
>> calculation but still the same problem. Here is the edited file.
> ...
>> trajin eq_pro_hGH.mdcrd
>> rms first out eq_pro_hGH_rms_bef.out .CA,C,N
>> center : 1-190
> ^^^
> center :1-190 mass origin
>
>> image origin center familiar
>> trajout eq_pro_hGH_reimage.mdcrd
>> rms first out eq_pro_hGH_rms.out .CA,C,N
>> strip :WAT
>> strip :Na+
>> average avg.pdb pdb
>> atomicfluct out out bfactor_eq_pro_bfactor.dat byatom bfactor
>> trajout eq_pro_hGH_reima_strip.mdcrd nobox
>
> --tec3
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
to majordomo.scripps.edu
Received on Sun Jun 15 2008 - 06:07:19 PDT
