I would like to create a 2D RMS plot for my MD trajectory, but I'm having
trouble figuring out how to do so. According to the rdparm documentation, I
should use this program to create one. But I keep getting a strange error.
This occurs whether I use the latest version of AmberTools or our older
version of amber (amber 8).
Here are my commands:
$ rdparm 1w50.nowat.prmtop
RDPARM MENU: rms 1w50.nowat.1-11-50.mdcrd
WARNING in dispatchToken: Token string "rms" not found in tokenlist
WARNING in dispatchToken: Token string "1w50.nowat.1-11-50.mdcrd" not found
in tokenlist
RDPARM MENU: rms
WARNING in dispatchToken: Token string "rms" not found in tokenlist
RDPARM MENU: quit
EXITING program...
For what it's worth, other commands seem to run fine, and I have used the
prmtop file numerous times. I looked in the source code for rdparm, and
indeed, rms is not among the tokens in rdparmTokenlist, although the help
still discusses it and even has a "help rms" entry for it. Any help would
be greatly appreciated!
Thanks,
Steve
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Received on Sun Jun 15 2008 - 06:07:18 PDT
