Amber Archive Jun 2008: by messages with attachments

AMBER: writing a script in amber Taufik Al-Sarraj (Mon Jun 02 2008 - 17:28:39 PDT)
1. taufik_alsarraj.vcf (362 bytes)
Re: AMBER: drawing repeated units Taufik Al-Sarraj (Tue Jun 03 2008 - 15:25:59 PDT)
1. taufik_alsarraj.vcf (362 bytes)
Re: AMBER: drawing repeated units Taufik Al-Sarraj (Tue Jun 03 2008 - 16:58:25 PDT)
1. taufik_alsarraj.vcf (362 bytes)
Re: AMBER: drawing repeated units Taufik Al-Sarraj (Wed Jun 04 2008 - 13:17:57 PDT)
1. taufik_alsarraj.vcf (362 bytes)
Re: AMBER: problems with sleap Alan (Wed Jun 04 2008 - 23:48:03 PDT)
1. AAA.pdb (3501 bytes)
2. dmp.pdb (6484 bytes)
AMBER: NAN errors in Etot, EPtot, EKtot and EELEC Praveena Gopal (Thu Jun 05 2008 - 05:04:00 PDT)
1. dt_0.002.out (15808 bytes)
2. dt_0.001.out (37886 bytes)
AMBER: Query on MM-PBSA Neha Gandhi (Thu Jun 05 2008 - 22:46:32 PDT)
1. snapshot_statistics_amber.out (2125 bytes)
2. snapshot_statistics_delphi.out (2125 bytes)
AMBER: NAN errors still exist Praveena Gopal (Fri Jun 06 2008 - 02:56:58 PDT)
1. dt_0.001.out (36779 bytes)
2. dt_0.002.out (8973 bytes)
3. dgbeq.out (661579 bytes)
AMBER: VMD Movie .mdcrd file ptraj Campbell, Patrick (Fri Jun 06 2008 - 06:22:50 PDT)
1. extract_705.out (2744 bytes)
Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu Jens Lattig (Tue Jun 10 2008 - 01:00:08 PDT)
1. config.h (2850 bytes)
2. Makefile_at (1954 bytes)
AMBER: QM/MM Taufik Al-Sarraj (Wed Jun 11 2008 - 09:09:24 PDT)
1. taufik_alsarraj.vcf (362 bytes)
Re: AMBER: QM/MM Taufik Al-Sarraj (Wed Jun 11 2008 - 09:28:34 PDT)
1. taufik_alsarraj.vcf (362 bytes)
AMBER: Equilibration/Heating - Protein fixed -Problem dpandit.brandeis.edu (Wed Jun 11 2008 - 08:31:40 PDT)
1. eq_sol1_jun.out (10623 bytes)
AMBER: Antechamber and topology file TAEJIN KIM (Wed Jun 11 2008 - 16:05:14 PDT)
1. ra.prmtop (26384 bytes)
2. ra_anetchamber.prmtop (23645 bytes)
AMBER: Coordinated Zinc Khaled Barakat (Wed Jun 11 2008 - 12:29:18 PDT)
1. out.pdb (6056 bytes)
AMBER: improving GAFF sulfonamide parameters Floris Buelens (Tue Jun 17 2008 - 02:57:46 PDT)
1. slfam.prmtop (9051 bytes)
2. slfam.restrt (268 bytes)
AMBER: to understand GAFF: about A and B coefficients Alan (Tue Jun 17 2008 - 09:42:34 PDT)
1. benzene.top (10733 bytes)
Re: AMBER: MM-PBSA Miguel Ortiz-Lombardía (Wed Jun 18 2008 - 07:41:12 PDT)
1. multilink.py (606 bytes)
AMBER: questions about gaff yzhao (Wed Jun 18 2008 - 19:01:45 PDT)
1. gaff_parameters_for_energy_calculation.txt (2354 bytes)
2. Duplicate.txt (9644 bytes)
AMBER: How to extract solvent box information from .rst or .mdcrd files? Panwang Zhou (Thu Jun 19 2008 - 07:13:18 PDT)
1. fox.gif (9519 bytes)
Re: Re: AMBER: How to extract solvent box information from .rst or .mdcrd files? Panwang Zhou (Thu Jun 19 2008 - 08:34:02 PDT)
1. fox.gif (9519 bytes)
Re: AMBER: [Fwd: failure to load box parameters] Daniel Smith (Mon Jun 23 2008 - 14:26:22 PDT)
1. leap.log (13780 bytes)
AMBER: dihedral potential with odd periodicity Germain Vallverdu (Tue Jun 24 2008 - 07:43:26 PDT)
1. ethene.zip (15744 bytes)
Re: AMBER: drawing repeated units Taufik Al-Sarraj (Tue Jun 24 2008 - 15:15:39 PDT)
1. taufik_alsarraj.vcf (362 bytes)
AMBER: how to derive torsional angle parameters in gaff Junmei Wang (Tue Jun 24 2008 - 18:45:42 PDT)
1. c3ccc3.pdf (23958 bytes)
Re: AMBER: Compilation of amber8 patched with ramd Francesco Pietra (Wed Jun 25 2008 - 01:17:59 PDT)
1. mdout.dif (10584 bytes)
2. parallel_run.ramd_25jun.out (898 bytes)
Re: AMBER: sleap - TER-card In Hee Park (Thu Jun 26 2008 - 17:31:40 PDT)
1. xxx.pdb (16937 bytes)
2. xxx.prmtop (53795 bytes)
3. xxx.inpcrd (9309 bytes)
AMBER: MM-PBSA calculation problem Wei Huang (Mon Jun 30 2008 - 09:41:16 PDT)
1. 8 (207029 bytes)

Amber Archive Jun 2008 by messages with attachments