Amber Archive Mar 2026: by subject

[AMBER] AMBER MD web site down?
- David A Case via AMBER (Wed Mar 11 2026 - 07:47:59 PDT)
- Maria Nagan via AMBER (Tue Mar 10 2026 - 06:01:31 PDT)
- Anders Frederiksen via AMBER (Tue Mar 10 2026 - 01:24:38 PDT)
- Téletchéa Stéphane via AMBER (Tue Mar 10 2026 - 01:18:42 PDT)
[AMBER] AmberTools bug in pyresp_gen.py
- David A Case via AMBER (Thu Mar 05 2026 - 19:49:41 PST)
- David A Case via AMBER (Tue Mar 03 2026 - 19:51:17 PST)
- Vlad via AMBER (Tue Mar 03 2026 - 15:57:38 PST)
[AMBER] AmberTools25 Compilation Error Due to Python 3.13 and NumPy 1.26.4 Conflict
- David A Case via AMBER (Wed Mar 11 2026 - 08:00:44 PDT)
- Zihao Bai via AMBER (Tue Mar 10 2026 - 20:49:04 PDT)
[AMBER] best approaches to parameterize a small molecule
- Prithviraj Nandigrami via AMBER (Thu Mar 19 2026 - 05:42:33 PDT)
[AMBER] Clarification on TI output (DV/DL, logdvdl, MBAR) and convergence in soft-core absolute free energy calculations
- Rahul Singal via AMBER (Thu Mar 19 2026 - 03:36:10 PDT)
[AMBER] Conflictions of ambertools25 installation
- David A Case via AMBER (Wed Mar 11 2026 - 08:03:41 PDT)
- Skanda Sastry via AMBER (Wed Mar 11 2026 - 06:52:19 PDT)
- 류종혁 via AMBER (Tue Mar 10 2026 - 23:43:06 PDT)
[AMBER] Covalent warhead reactivity using QM workflows
- Debarati DasGupta via AMBER (Sat Mar 28 2026 - 11:10:30 PDT)
[AMBER] CUDA compilation after PLUMED patching
- Höfinger, Siegfried via AMBER (Fri Mar 13 2026 - 08:30:42 PDT)
[AMBER] Hydration shells from MD simulations
- Daniel Roe via AMBER (Thu Mar 19 2026 - 03:07:43 PDT)
- Ivana Nikšić-Franjić via AMBER (Wed Mar 18 2026 - 05:49:44 PDT)
[AMBER] Imaging question
- Slimak, Stephen Rudolph via AMBER (Thu Mar 05 2026 - 15:21:40 PST)
[AMBER] Issue with Modified .mdl Charges Not Reflected in Generated .xvv (1D-RISM)
- angad sharma via AMBER (Wed Mar 18 2026 - 18:52:23 PDT)
[AMBER] Ligand Prepartion
- David A Case via AMBER (Mon Mar 30 2026 - 07:43:20 PDT)
- Sarah Witzke via AMBER (Mon Mar 30 2026 - 06:23:01 PDT)
- ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Mon Mar 30 2026 - 00:49:03 PDT)
[AMBER] OPC water model misread by NAMD
- Hector A. Baldoni via AMBER (Fri Mar 06 2026 - 04:44:58 PST)
- Guillaume Petit via AMBER (Fri Mar 06 2026 - 00:18:45 PST)
[AMBER] Parameters for inorganic pyrophosphate
- Jenny 148 via AMBER (Tue Mar 17 2026 - 12:50:08 PDT)
[AMBER] PM6-ML in QM/MM via AMBER
- Goetz, Andreas via AMBER (Wed Mar 25 2026 - 16:46:37 PDT)
- Schattenberg, Caspar via AMBER (Wed Mar 25 2026 - 01:21:37 PDT)
[AMBER] pmemd24 + ntt=9
- Carlos Simmerling via AMBER (Tue Mar 31 2026 - 11:11:24 PDT)
- Jones De Andrade via AMBER (Tue Mar 31 2026 - 10:51:41 PDT)
[AMBER] pmemd24 problems with RTX5090
- David A Case via AMBER (Wed Mar 11 2026 - 14:08:11 PDT)
[AMBER] Possible caveats in using HMR with ZAFF modeling
- saverio lemme via AMBER (Tue Mar 24 2026 - 05:36:22 PDT)
[AMBER] Question about QM/MM TS optimization
- Ramdhan,Peter A via AMBER (Sun Mar 15 2026 - 14:35:36 PDT)
Ligand Prepartion
- ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER (Mon Mar 30 2026 - 11:01:44 PDT)
- Téletchéa Stéphane via AMBER (Mon Mar 30 2026 - 10:04:30 PDT)

Amber Archive Mar 2026 by subject