Amber Archive Mar 2026: by author

Anders Frederiksen via AMBER
- Re: [AMBER] AMBER MD web site down? (Tue Mar 10 2026 - 01:24:38 PDT)
angad sharma via AMBER
- [AMBER] Issue with Modified .mdl Charges Not Reflected in Generated .xvv (1D-RISM) (Wed Mar 18 2026 - 18:52:23 PDT)
Carlos Simmerling via AMBER
- Re: [AMBER] pmemd24 + ntt=9 (Tue Mar 31 2026 - 11:11:24 PDT)
Daniel Roe via AMBER
- Re: [AMBER] Hydration shells from MD simulations (Thu Mar 19 2026 - 03:07:43 PDT)
David A Case via AMBER
- Re: [AMBER] Ligand Prepartion (Mon Mar 30 2026 - 07:43:20 PDT)
- Re: [AMBER] pmemd24 problems with RTX5090 (Wed Mar 11 2026 - 14:08:11 PDT)
- Re: [AMBER] Conflictions of ambertools25 installation (Wed Mar 11 2026 - 08:03:41 PDT)
- Re: [AMBER] AmberTools25 Compilation Error Due to Python 3.13 and NumPy 1.26.4 Conflict (Wed Mar 11 2026 - 08:00:44 PDT)
- Re: [AMBER] AMBER MD web site down? (Wed Mar 11 2026 - 07:47:59 PDT)
- Re: [AMBER] AmberTools bug in pyresp_gen.py (Thu Mar 05 2026 - 19:49:41 PST)
- Re: [AMBER] AmberTools bug in pyresp_gen.py (Tue Mar 03 2026 - 19:51:17 PST)
Debarati DasGupta via AMBER
- [AMBER] Covalent warhead reactivity using QM workflows (Sat Mar 28 2026 - 11:10:30 PDT)
ElBagoury, Abdulrahman Walid Attia Ibrahim via AMBER
- Re: [AMBER] [EXTERN] Re: Ligand Prepartion (Mon Mar 30 2026 - 11:01:44 PDT)
- [AMBER] Ligand Prepartion (Mon Mar 30 2026 - 00:49:03 PDT)
Goetz, Andreas via AMBER
- Re: [AMBER] PM6-ML in QM/MM via AMBER (Wed Mar 25 2026 - 16:46:37 PDT)
Guillaume Petit via AMBER
- [AMBER] OPC water model misread by NAMD (Fri Mar 06 2026 - 00:18:45 PST)
Hector A. Baldoni via AMBER
- Re: [AMBER] OPC water model misread by NAMD (Fri Mar 06 2026 - 04:44:58 PST)
Höfinger, Siegfried via AMBER
- Re: [AMBER] CUDA compilation after PLUMED patching (Fri Mar 13 2026 - 08:30:42 PDT)
Ivana Nikšić-Franjić via AMBER
- [AMBER] Hydration shells from MD simulations (Wed Mar 18 2026 - 05:49:44 PDT)
Jenny 148 via AMBER
- [AMBER] Parameters for inorganic pyrophosphate (Tue Mar 17 2026 - 12:50:08 PDT)
Jones De Andrade via AMBER
- [AMBER] pmemd24 + ntt=9 (Tue Mar 31 2026 - 10:51:41 PDT)
Maria Nagan via AMBER
- Re: [AMBER] AMBER MD web site down? (Tue Mar 10 2026 - 06:01:31 PDT)
Prithviraj Nandigrami via AMBER
- [AMBER] best approaches to parameterize a small molecule (Thu Mar 19 2026 - 05:42:33 PDT)
Rahul Singal via AMBER
- [AMBER] Clarification on TI output (DV/DL, logdvdl, MBAR) and convergence in soft-core absolute free energy calculations (Thu Mar 19 2026 - 03:36:10 PDT)
Ramdhan,Peter A via AMBER
- [AMBER] Question about QM/MM TS optimization (Sun Mar 15 2026 - 14:35:36 PDT)
Sarah Witzke via AMBER
- Re: [AMBER] Ligand Prepartion (Mon Mar 30 2026 - 06:23:01 PDT)
saverio lemme via AMBER
- [AMBER] Possible caveats in using HMR with ZAFF modeling (Tue Mar 24 2026 - 05:36:22 PDT)
Schattenberg, Caspar via AMBER
- [AMBER] PM6-ML in QM/MM via AMBER (Wed Mar 25 2026 - 01:21:37 PDT)
Skanda Sastry via AMBER
- Re: [AMBER] Conflictions of ambertools25 installation (Wed Mar 11 2026 - 06:52:19 PDT)
Slimak, Stephen Rudolph via AMBER
- Re: [AMBER] Imaging question (Thu Mar 05 2026 - 15:21:40 PST)
Téletchéa Stéphane via AMBER
- Re: [AMBER] [EXTERN] Re: Ligand Prepartion (Mon Mar 30 2026 - 10:04:30 PDT)
- [AMBER] AMBER MD web site down? (Tue Mar 10 2026 - 01:18:42 PDT)
Vlad via AMBER
- [AMBER] AmberTools bug in pyresp_gen.py (Tue Mar 03 2026 - 15:57:38 PST)
Zihao Bai via AMBER
- [AMBER] AmberTools25 Compilation Error Due to Python 3.13 and NumPy 1.26.4 Conflict (Tue Mar 10 2026 - 20:49:04 PDT)
류종혁 via AMBER
- [AMBER] Conflictions of ambertools25 installation (Tue Mar 10 2026 - 23:43:06 PDT)

Amber Archive Mar 2026 by author