[AMBER] Conflictions of ambertools25 installation

From: ·ùÁ¾Çõ via AMBER <amber.ambermd.org>
Date: Wed, 11 Mar 2026 06:43:06 +0000

Hello,

I was trying to install ambertools25 in Rocky Linux 9.4 environment,
but I faced some error in the run_cmake process, with a last error message fragment of cmake.log below.

________________________________
Channels:
 - conda-forge
Platform: linux-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package numpy-1.26.4-py310hb13e2d6_0 requires python >=3.10,<3.11.0a0, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
¦§¦¡ numpy =1.26.4 * is installable with the potential options
¦¢ ¦§¦¡ numpy 1.26.4 would require
¦¢ ¦¢ ¦¦¦¡ python >=3.10,<3.11.0a0 *, which can be installed;
¦¢ ¦§¦¡ numpy 1.26.4 would require
¦¢ ¦¢ ¦¦¦¡ python >=3.11,<3.12.0a0 *, which can be installed;
¦¢ ¦§¦¡ numpy 1.26.4 would require
¦¢ ¦¢ ¦¦¦¡ python >=3.12,<3.13.0a0 *, which can be installed;
¦¢ ¦¦¦¡ numpy 1.26.4 would require
¦¢ ¦¦¦¡ python >=3.9,<3.10.0a0 *, which can be installed;
¦¦¦¡ pin on python =3.13 * is not installable because it requires
   ¦¦¦¡ python =3.13 *, which conflicts with any installable versions previously reported.

Pins seem to be involved in the conflict. Currently pinned specs:
 - python=3.13


CMake Error at cmake/UseMiniconda.cmake:177 (message):
  Installation of packages failed! Please fix what's wrong, or disable
  Miniconda.
Call Stack (most recent call first):
  cmake/PythonInterpreterConfig.cmake:72 (download_and_use_miniconda)
  CMakeLists.txt:129 (include)


-- Configuring incomplete, errors occurred!
________________________________


I have suspected this issue was likely due to a recent miniforge upgrade and python 3.13,
so I tried some workarounds, while keeping the -DDOWNLOAD_MINICONDA=TRUE flag, it was not that successful.
I'm sending this message to see if I can ask for solution of this issue, or if I should wait for ambertools26.


Best Regards,
Jonghyuk Ryu
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Received on Wed Mar 11 2026 - 00:00:03 PDT
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