Amber Archive Jan 2026: by subject

[AMBER] 3DNA fiber PDB compatibility with AMBER tleap
- David A Case via AMBER (Thu Jan 08 2026 - 20:48:29 PST)
- MANVENDRA SINGH via AMBER (Thu Jan 08 2026 - 02:27:35 PST)
[AMBER] AMBER-PLUMED box error
- Sangita Kachhap via AMBER (Fri Jan 23 2026 - 13:54:18 PST)
[AMBER] AMBER2LAMMPS
- Arun Srikanth via AMBER (Thu Jan 29 2026 - 17:57:15 PST)
[AMBER] Error while running MMPBSA using Amber16 input script on BRaF cluster
- David A Case via AMBER (Fri Jan 02 2026 - 09:07:24 PST)
[AMBER] GAMESS RESP
- David A Case via AMBER (Tue Jan 06 2026 - 08:50:50 PST)
- Mandar Kulkarni via AMBER (Tue Jan 06 2026 - 00:50:00 PST)
[AMBER] How to obtain a Z-DNA structure from NAB?
- David A Case via AMBER (Thu Jan 08 2026 - 21:00:38 PST)
- Manasa Bharath ic44158 via AMBER (Thu Jan 08 2026 - 02:40:14 PST)
[AMBER] Identify catalytic water using cpptraj
- Abhilash J via AMBER (Mon Jan 05 2026 - 13:22:00 PST)
[AMBER] Looking at gaff2
- Téletchéa Stéphane via AMBER (Fri Jan 09 2026 - 00:59:13 PST)
[AMBER] Mg2+ parameters: Optimized or CM
[AMBER] Query regarding CUDA and Amber24 installation.
- Manasa Bharath ic44158 via AMBER (Tue Jan 06 2026 - 21:55:40 PST)
[AMBER] Query regarding DNA sequence generation in latest AMBER versions
[AMBER] Question about using 'free' in multihist
- Osman, Roman via AMBER (Thu Jan 22 2026 - 15:22:16 PST)
[AMBER] Removing PBC for protein–ligand complex
- Enrico Martinez via AMBER (Wed Jan 21 2026 - 15:01:10 PST)
[AMBER] Request for Guidance on Generating DCCM
- YASHIKA . via AMBER (Mon Jan 05 2026 - 22:26:23 PST)
[AMBER] RNA chi angle definition AMBER vs Gromacs
- Mandar Kulkarni via AMBER (Tue Jan 13 2026 - 03:56:09 PST)
[AMBER] tleap solvation box does not enclose all molecules (aggregation system)

Amber Archive Jan 2026 by subject