Amber Archive Jul 2023 by messages with attachments

158 messages: Starting Sun Jul 02 2023 - 06:30:02 PDT, Ending Mon Jul 31 2023 - 16:30:02 PDT
This period: Most recent messages
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[AMBER] output structure from tleap! Singh, Swapnil via AMBER (Mon Jul 03 2023 - 10:21:21 PDT)
1. qvyrojqm.png (403248 bytes)
Re: [AMBER] AmberTools23 changes antechamber behavior for GAFF2 brian.radak--- via AMBER (Thu Jul 06 2023 - 17:51:01 PDT)
1. parmchk_mwe.sh (5717 bytes)
[AMBER] RESP fitting with constraints, qout output charges NaN Albert Gauss via AMBER (Fri Jul 07 2023 - 01:23:28 PDT)
1. ANTECHAMBER_RESP1.IN (993 bytes)
2. ANTECHAMBER_RESP1.OUT (11234 bytes)
3. struc_opt_vaccum.xyz (2203 bytes)
Re: [AMBER] [Sender Not Verified] Rmsf profile after removing periodicity Enrico Martinez via AMBER (Fri Jul 07 2023 - 01:42:41 PDT)
1. rmsf.png (14751 bytes)
[AMBER] DNA topology file error Sneha Kandapal via AMBER (Tue Jul 18 2023 - 08:02:40 PDT)
1. 30D69D3828DB443EACF61EBCDA27A14F.png (284456 bytes)
2. noH.pdb (32889 bytes)
[AMBER] Problems running a membrane-bound protein with ATP-Mg complex using CHARMM-GUI parameters Markowska (Thu Jul 20 2023 - 05:04:26 PDT)
1. step6.1_equilibration.mdout (68279 bytes)
Re: [AMBER] TIP5P water model parameter files issue Zafar,Muhammad Saqlain via AMBER (Wed Jul 26 2023 - 07:29:04 PDT)
1. Tip5p.pdb (433 bytes)
[AMBER] How to neutralize charge after replacing the charges calculated by antechamber Amin Sagar via AMBER (Wed Jul 26 2023 - 09:54:59 PDT)
1. image001.png (19765 bytes)
Re: [AMBER] Problems running a membrane-bound protein with ATP-Mg complex using CHARMM-GUI parameters Markowska (Mon Jul 31 2023 - 02:38:13 PDT)
1. atp_question.png (70438 bytes)