[AMBER] azobenzene atoms name in amber format

From: Aashish Bhatt <aashish.ph16221.inst.ac.in>
Date: Mon, 31 Aug 2020 17:12:26 +0530

Dear Sir

I have tried to prepare a force field parameter for azobenzene with
conjugated peptide.
In the RN=NR bond, antechamber is naming as a dummy(DU) in the mol2 file.
As I checked in the parm10.dat file I think the name is N* but I am not
sure can you help me with the naming system.

Best Regards

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Received on Mon Aug 31 2020 - 05:00:03 PDT
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