Re: [AMBER] azobenzene atoms name in amber format

From: David A Case <david.case.rutgers.edu>
Date: Mon, 31 Aug 2020 15:30:12 -0400

On Mon, Aug 31, 2020, Aashish Bhatt wrote:
>
>I have tried to prepare a force field parameter for azobenzene with
>conjugated peptide.
>In the RN=NR bond, antechamber is naming as a dummy(DU) in the mol2 file.
>As I checked in the parm10.dat file I think the name is N* but I am not
>sure can you help me with the naming system.

Can you provide the antechamber command line you are using, along with
the input PDB file?

...thx...dac


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Received on Mon Aug 31 2020 - 13:00:03 PDT
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