Re: [AMBER] azobenzene atoms name in amber format

From: David A Case <>
Date: Mon, 31 Aug 2020 15:30:12 -0400

On Mon, Aug 31, 2020, Aashish Bhatt wrote:
>I have tried to prepare a force field parameter for azobenzene with
>conjugated peptide.
>In the RN=NR bond, antechamber is naming as a dummy(DU) in the mol2 file.
>As I checked in the parm10.dat file I think the name is N* but I am not
>sure can you help me with the naming system.

Can you provide the antechamber command line you are using, along with
the input PDB file?


AMBER mailing list
Received on Mon Aug 31 2020 - 13:00:03 PDT
Custom Search