Re: [AMBER] error while running tutorial B5

From: Gustaf Olsson <>
Date: Mon, 24 Aug 2020 08:03:58 +0000

Should one post suggestions regarding the tutorials here to the mailing list or somewhere else?

Best regards
// Gustaf

> On 24 Aug 2020, at 03:39, David A Case <> wrote:
> On Mon, Aug 24, 2020, Ayesha Fatima wrote:
>> FATAL: Atom .R<VAL 65>.A<H3 17> does not have a type.
> Somehow the program thinks that your VAL 65 is at the N-terminus of a new
> chain. Look at the PDB file that is the input for this, and see if you can
> figure out what is going on: is there a TER card preceding VAL65, or some
> other clue? If you study the leap.log file carefully, you will probably find
> a message that says residue 65 is being assigned to NVAL (an N-terminal
> valine).
> We are trying to get people to go through the tutorials, which can easily get
> out of date. But see if you can figure out what is going on. Did you do
> anything different from what was described on the web site?
> ....regards...dac
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Received on Mon Aug 24 2020 - 01:30:03 PDT
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