Re: [AMBER] mismatch base pair from nab

From: Martina Devi <martinadevi2011.gmail.com>
Date: Tue, 25 Aug 2015 18:29:38 +0530

Thank you sir for your reply

I did not get any error message.The base which I did not edit can be viewed
in xleap The desired edited base which I want to load cannot be viewed in
xleap.

What I did was I made two pdb files. Then I edited the required portion and
copied from the other pdb. Is this technique correct?

Martina
Research Scholar
Shillong
INDIA

On Tue, Aug 25, 2015 at 5:24 PM, Carlos Simmerling <
carlos.simmerling.gmail.com> wrote:

> What exactly happens when leap does not load it? Do you get an error
> message?
> On Aug 25, 2015 7:49 AM, "Martina Devi" <martinadevi2011.gmail.com> wrote:
>
> > Hello everyone
> >
> > I have to build mismatch base pair. I tried building such base pair by
> > generating
> > pdb file from nab,then PDB is edited with a text editor, and change the
> > name of the residue to what is desired. but leap does not load the
> > base.Would anybody please tell how to load the mismatch base.
> >
> > Thank You in advance
> >
> > Martina
> > Research Scholar
> > Shillong
> > INDIA
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> >
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Received on Tue Aug 25 2015 - 06:00:03 PDT
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