Re: [AMBER] mismatch base pair from nab

From: David A Case <>
Date: Tue, 25 Aug 2015 15:57:41 -0400

On Tue, Aug 25, 2015, Martina Devi wrote:
> I did not get any error message.The base which I did not edit can be viewed
> in xleap The desired edited base which I want to load cannot be viewed in
> xleap.

Can you be more specific about what you mean by "cannot be viewed in xleap"?
What were the exact commands you typed, and what was the exact response from
the program?

Don't restrict your reporting to what you think are "error messages". In
order to help, we need to know everything that happened.

> What I did was I made two pdb files. Then I edited the required portion and
> copied from the other pdb. Is this technique correct?

Remember that you must remove any atoms in your modified residue that are not
supposed to be there: all atoms present in the PDB file must also be in the
library file for the modified residue.


AMBER mailing list
Received on Tue Aug 25 2015 - 13:00:03 PDT
Custom Search