Re: [AMBER] Plotting heat maps in AMBER aMD simualtions

From: Levi Pierce <levipierce.gmail.com>
Date: Thu, 18 Apr 2013 10:36:12 -0400

Neha,

   I will put together a tutorial and a python script to reweight and try
to get that posted up here this weekend. This has been on my todo list ;)

Cheers,
~Levi


On Thu, Apr 18, 2013 at 8:04 AM, Jason Swails <jason.swails.gmail.com>wrote:

> On Wed, Apr 17, 2013 at 10:52 AM, Levi Pierce <levipierce.gmail.com>
> wrote:
>
> > I have had a bunch of requests for this and I basically send along my
> > Matlab script that I use to do this but it probably makes sense to just
> add
> > this in to cpptraj...Jason what do you think?
> >
>
> It sounds like a good place for it to end up ultimately, but it won't make
> it in before the next AT release. It would probably help to have a
> tutorial explaining how to run and reweight AMD simulations (in addition to
> a file describing the amd.log file with units), and putting the script on
> the tutorial would be a great help as well.
>
> All the best,
> Jason
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
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>



-- 
-- 
Levi Pierce | Senior Software Developer | Schrodinger, Inc. | *(212)548-2379
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Received on Thu Apr 18 2013 - 08:00:02 PDT
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