Re: [AMBER] xlead

From: Antonio Entrena Guadix <aentrena.ugr.es>
Date: Wed, 16 Jan 2013 11:40:02 +0100

Dear Dr. Case


I really have a problem with Xleap. The program does not work. Whe I
try to load a molecule using the mouse, it does not wok. I have sent a
message including a video in which the problem could be observed.
Nevertheless, I have received the following response:



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    Re: [AMBER] xleap

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I did not know that the size of the message is limited.

Could you, please, indicate how can I sent this video describing the
Xleap error?

Sincerely

Antonio




El 15/01/2013, a las 14:05, David A Case escribió:

> On Tue, Jan 15, 2013, aentrena wrote:
>
>> Nevertheless, I have a problem with xleap program. When I start
>> xleap,
>> only one the ???XLEaP: Universe Editor??? window is open, as can be
>> seen on
>> the attached figure, and the following error is observed:
>
> There is never more than one such window open; your screenshot looks
> fine.
>>
>>
>> [~]$ xleap
>> -I: Adding /home/programas/amber12/dat/leap/prep to search path.
>> -I: Adding /home/programas/amber12/dat/leap/lib to search path.
>> -I: Adding /home/programas/amber12/dat/leap/parm to search path.
>> -I: Adding /home/programas/amber12/dat/leap/cmd to search path.
>> Warning: Cannot convert string
>> "-*-helvetica-medium-r-*-*-18-*-*-*-*-*-*-*" to type FontStruct
>> Warning: Cannot convert string
>> "-*-helvetica-medium-o-*-*-18-*-*-*-*-*-*-*" to type FontStruct
>
> You can try to Google this and install some fonts, but if it were
> me, I'd just
> ignore the warnings.
>
>>
>> When the "Xleap: Universe Editor" window is closed, another error is
>> observed:
>>
>>
>> [ ~]$ xleap
>> -I: Adding /home/programas/amber12/dat/leap/prep to search path.
>> -I: Adding /home/programas/amber12/dat/leap/lib to search path.
>> -I: Adding /home/programas/amber12/dat/leap/parm to search path.
>> -I: Adding /home/programas/amber12/dat/leap/cmd to search path.
>> Warning: Cannot convert string
>> "-*-helvetica-medium-r-*-*-18-*-*-*-*-*-*-*" to type FontStruct
>> Warning: Cannot convert string
>> "-*-helvetica-medium-o-*-*-18-*-*-*-*-*-*-*" to type FontStruct
>> XIO: fatal IO error 11 (Resource temporarily unavailable) on X
>> server
>> ":0.0"
>> after 1897 requests (1897 known processed) with 0 events
>> remaining.
>
> I'm lost here: the Universe Editor window should only be closed when
> your
> xleap session is done. So, is this really a problem? Basically, do
> you have
> annoying warnings and message, or do you really have a non-
> funcioning xleap?
>
> ...dac
>
>
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Received on Wed Jan 16 2013 - 03:00:02 PST
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