On Tue, Jan 8, 2013 at 1:39 AM, Udaysankar Midya <umidya.iitkgp.gmail.com>wrote:
> Hi AMBER user
>
> I am trying to install the serial version of amber12 and amberTolls12
> in our 64bit Sun Cluster. OS RedHat.
>
>
> When I run *./configure gnu*
> it shows the following error
>
> Checking for updates...
> Error: No internet access!
> Check for updates failed.
> Searching for python2... Found python2.4: /usr/bin/python2.4
>
> Obtaining the gnu suite version:
> gcc -v
> The version is 4.1.2
> ERROR: RISM and PBSA FFT solver require version 4.3 or higher of the GNU
> compiler.
> Please re-run configure with the '-nofftw3' flag to use this
> compiler:
> ./configure -nofftw3 gnu
> Configure failed due to the errors above!
>
> When I run *./configure -nofftw3 gnu *
> It shows the following errors
>
>
> Checking for updates...
> Error: No internet access!
> Check for updates failed.
> Searching for python2... Found python2.4: /usr/bin/python2.4
>
> Obtaining the gnu suite version:
> gcc -v
> The version is 4.1.2
>
> Testing the gcc compiler:
> gcc -DUSE_AMBER_C9XCOMPLEX -D_FILE_OFFSET_BITS=64
> -D_LARGEFILE_SOURCE -o testp testp.c
> In file included from /usr/include/features.h:329,
> from /usr/include/stdio.h:28,
> from testp.c:1:
> /usr/include/sys/cdefs.h:313:27: error: bits/wordsize.h: No such file or
> directory
> In file included from /usr/include/features.h:352,
> from /usr/include/stdio.h:28,
> from testp.c:1:
> /usr/include/gnu/stubs.h:11:3: error: #error "unexpected value for
> __WORDSIZE macro"
> In file included from testp.c:1:
> /usr/include/stdio.h:36:25: error: bits/types.h: No such file or directory
> /usr/include/stdio.h:72:19: error: libio.h: No such file or directory
>
These are not good. Basically what you are being told here is that "hello
world" cannot compile: http://en.wikipedia.org/wiki/Hello_world_program
Your compilers are broken, which means we are unlikely to be of any help.
Google and/or local gurus that can help you fix them on-site are probably
your best bet.
Good luck,
Jason
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jan 08 2013 - 05:00:04 PST
