On Tue, Jan 08, 2013 at 07:50:27AM -0500, Jason Swails wrote:
> On Tue, Jan 8, 2013 at 1:39 AM, Udaysankar Midya <umidya.iitkgp.gmail.com>wrote:
>
> > Hi AMBER user
> >
> > I am trying to install the serial version of amber12 and amberTolls12
> > in our 64bit Sun Cluster. OS RedHat.
RHEL5 or CentOS-5 serie according to your gcc version.
...
> >
> > Obtaining the gnu suite version:
> > gcc -v
> > The version is 4.1.2
> >
> > Testing the gcc compiler:
> > gcc -DUSE_AMBER_C9XCOMPLEX -D_FILE_OFFSET_BITS=64
> > -D_LARGEFILE_SOURCE -o testp testp.c
> > In file included from /usr/include/features.h:329,
> > from /usr/include/stdio.h:28,
> > from testp.c:1:
> > /usr/include/sys/cdefs.h:313:27: error: bits/wordsize.h: No such file or
> > directory
It's part of the glibc-headers package which is probably not installed
by default.
>
> These are not good. Basically what you are being told here is that "hello
> world" cannot compile: http://en.wikipedia.org/wiki/Hello_world_program
>
> Your compilers are broken, which means we are unlikely to be of any help.
> Google and/or local gurus that can help you fix them on-site are probably
> your best bet.
-> yum groupinstall development-libs
For the parallel part you will need more help from your local admin,
depending on the MPI version that is installed (which depends on the
hardware network in place for your cluster).
my 2 cents,
Tru
--
Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
mailto:tru.pasteur.fr | tel/fax +33 1 45 68 87 37/19
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
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Received on Thu Jan 10 2013 - 13:30:04 PST
