Hi AMBER user
I am trying to install the serial version of amber12 and amberTolls12
in our 64bit Sun Cluster. OS RedHat.
When I run *./configure gnu*
it shows the following error
Checking for updates...
Error: No internet access!
Check for updates failed.
Searching for python2... Found python2.4: /usr/bin/python2.4
Obtaining the gnu suite version:
gcc -v
The version is 4.1.2
ERROR: RISM and PBSA FFT solver require version 4.3 or higher of the GNU
compiler.
Please re-run configure with the '-nofftw3' flag to use this
compiler:
./configure -nofftw3 gnu
Configure failed due to the errors above!
When I run *./configure -nofftw3 gnu *
It shows the following errors
Checking for updates...
Error: No internet access!
Check for updates failed.
Searching for python2... Found python2.4: /usr/bin/python2.4
Obtaining the gnu suite version:
gcc -v
The version is 4.1.2
Testing the gcc compiler:
gcc -DUSE_AMBER_C9XCOMPLEX -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -o testp testp.c
In file included from /usr/include/features.h:329,
from /usr/include/stdio.h:28,
from testp.c:1:
/usr/include/sys/cdefs.h:313:27: error: bits/wordsize.h: No such file or
directory
In file included from /usr/include/features.h:352,
from /usr/include/stdio.h:28,
from testp.c:1:
/usr/include/gnu/stubs.h:11:3: error: #error "unexpected value for
__WORDSIZE macro"
In file included from testp.c:1:
/usr/include/stdio.h:36:25: error: bits/types.h: No such file or directory
/usr/include/stdio.h:72:19: error: libio.h: No such file or directory
In file included from testp.c:1:
/usr/include/stdio.h:90: error: expected =, ,, ;, asm or
__attribute__ before fpos_t
/usr/include/stdio.h:138:28: error: bits/stdio_lim.h: No such file or
directory
/usr/include/stdio.h:343: error: expected declaration specifiers or ...
before _G_va_list
/usr/include/stdio.h:348: error: expected declaration specifiers or ...
before _G_va_list
/usr/include/stdio.h:351: error: expected declaration specifiers or ...
before _G_va_list
/usr/include/stdio.h:362: error: expected declaration specifiers or ...
before _G_va_list
/usr/include/stdio.h:682: error: expected declaration specifiers or ...
before __off64_t
/usr/include/stdio.h:685: error: expected =, ,, ;, asm or
__attribute__ before ftello
/usr/include/stdio.h:707: error: expected declaration specifiers or ...
before fpos_t
/usr/include/stdio.h:709: error: expected ;, , or ) before * token
/usr/include/stdio.h:754:30: error: bits/sys_errlist.h: No such file or
directory
./configure2: line 1538: ./testp: No such file or directory
Error: Unable to compile a C program using gcc -DUSE_AMBER_C9XCOMPLEX
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
Please check your compiler settings or configure flags.
Configure failed due to the errors above!
I have installed (softlink) g95. Can anyone please tell me where I am going
wrong?
Thanks
Uday Sankar Midya
IIT Kharagpur
*
*
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Received on Mon Jan 07 2013 - 23:00:03 PST
