Amber Archive Aug 2010: by messages with attachments

[AMBER] Solid surface simulation in Amber - the recommended approach ? Marek Maly (Tue Aug 03 2010 - 11:35:28 PDT)
1. Illustrations.png (813005 bytes)
2. prod_HA_PU.in (257 bytes)
3. density_HA_PU.in (246 bytes)
4. heat_HA_PU.in (329 bytes)
5. min1_HA_PU.in (147 bytes)
6. min2_HA_PU.in (130 bytes)
Re: [AMBER] Solid surface simulation in Amber Marek Maly (Tue Aug 03 2010 - 15:23:34 PDT)
1. OUT_files.zip (531286 bytes)
2. HA_End_01.jpg (200099 bytes)
3. HA_End_02.jpg (260164 bytes)
4. HA_Start_01.jpg (187250 bytes)
5. HA_Start_02.jpg (274215 bytes)
[AMBER] SASA over trajectory Beale, John (Mon Aug 09 2010 - 07:58:22 PDT)
1. image001.jpg (23871 bytes)
[AMBER] determining closest water molecules Beale, John (Tue Aug 10 2010 - 08:51:53 PDT)
1. image001.jpg (23871 bytes)
Re: [AMBER] Amber: saveamberparm error Karan Mehra (Wed Aug 11 2010 - 12:38:11 PDT)
1. ctx.pdb (89748 bytes)
[AMBER] Bug in MMPBSA.py.MPI Matthias Negri (Wed Aug 11 2010 - 17:05:36 PDT)
1. m_negri.vcf (644 bytes)
Re: [AMBER] How to change temperature in mm_pbsa.pl script pxq (Thu Aug 12 2010 - 07:52:49 PDT)
1. pl.out (56955 bytes)
2. mmpbsa_py.out (3575 bytes)
3. pl_statistics.out (2125 bytes)
4. mmpbsa_py.in (431 bytes)
[AMBER] problem of NM calculations fancy2012 (Fri Aug 13 2010 - 06:01:27 PDT)
1. entropy.out (12186 bytes)
Re: [AMBER] entropy calculations MMPBSA.py.MPI Matthias Negri (Tue Aug 17 2010 - 15:45:34 PDT)
1. files_mmpbsa.tar.gz (410363 bytes)
2. m_negri.vcf (644 bytes)
[AMBER] Trivial syntax problem ? Marek Maly (Wed Aug 18 2010 - 13:29:43 PDT)
1. heat_HA_PU.out (7234 bytes)
[AMBER] bond energy spikes in conjugent gradient minimization Vickie Roberts (Fri Aug 20 2010 - 00:55:21 PDT)
1. energy.all.jpg (84697 bytes)
[AMBER] exchange probability in remd Lekpa Duukori (Fri Aug 20 2010 - 10:14:40 PDT)
1. highest.temp.txt (284219 bytes)
[AMBER] [Fwd: Re: Interaction energy_mm_pbsa] moitrayee.mbu.iisc.ernet.in (Mon Aug 23 2010 - 04:35:40 PDT)
1. decomp.in (5680 bytes)
Re: [AMBER] Equilibration M. Reza Ganjalikhany (Mon Aug 23 2010 - 13:03:15 PDT)
1. NO.1.jpg (38380 bytes)
2. NO.2.jpg (35333 bytes)
Re: [AMBER] Problem: ambertool1.2 mopac is ok for my molecules, but ambertool1.4 sqm fails Shulin Zhuang (Mon Aug 23 2010 - 18:20:43 PDT)
1. 4.pdb (4285 bytes)
[AMBER] loading MG.off (./MG.off is not a valid database) Ehsan Habibi (Tue Aug 24 2010 - 01:16:48 PDT)
1. MG.off (1093 bytes)
[AMBER] RE : Regarding protein diffusion ABEL Stephane 175950 (Mon Aug 30 2010 - 07:04:33 PDT)
1. winmail.dat (4529 bytes)
[AMBER] addions2 function missing from sleap Ben Roberts (Mon Aug 30 2010 - 17:15:14 PDT)
1. smime.p7s (2674 bytes)

Amber Archive Aug 2010 by messages with attachments