[AMBER] Compiling failure of Amber 9

From: Yubo Fan <yubofan.mail.chem.tamu.edu>
Date: Tue, 29 Jun 2010 08:39:37 -0500

Hi, everyone,

I tried to compile Amber 9 and it failed with the following message:

>./configure -bintraj ifort_x86_64
>make clean
>make serial

make[2]: `nxtsec.o' is up to date.
make[2]: Leaving directory `/opt/amber9/src/lib'
ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o
writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o
geti.o unit.o getc.o alert.o echo.o get4c.o getd.o
   wlesprm.o lesprm.o les2prm.o checksz.o ../lib/random.o
../lib/mexit.o ../lib/nxtsec.o
-L/opt/intel/Compiler/11.1/072/mkl/lib/em64t -lvml -lmkl_lapack -lmkl
-lguide -lpthread
ld: cannot find -lvml
make[1]: *** [addles] Error 1
make[1]: Leaving directory `/opt/amber9/src/addles'
make: *** [serial] Error 2

The compiling of Amber 11 was succeeded. The intel compiler is version
11. Is it too new? Any advice?


Yubo Fan
Computational Chemistry and Drug Design Lab
Bioengineering and Bioinformatics Program
The Methodist Hospital Research Institute (TMHRI)
6565 Fannin St B5-022
Houston, TX 77030
Email: yfan.tmhs.org
Phone: (713) 441-8681

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Received on Tue Jun 29 2010 - 07:00:07 PDT
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