Edit the config.h file and change -lvml to -lsvml wherever it occurs in that
file. Then try again.
Good luck!
Jason
On Tue, Jun 29, 2010 at 9:39 AM, Yubo Fan <yubofan.mail.chem.tamu.edu>wrote:
> Hi, everyone,
>
> I tried to compile Amber 9 and it failed with the following message:
>
> >./configure -bintraj ifort_x86_64
> >make clean
> >make serial
>
> =====
> make[2]: `nxtsec.o' is up to date.
> make[2]: Leaving directory `/opt/amber9/src/lib'
> ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o
> writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o
> geti.o unit.o getc.o alert.o echo.o get4c.o getd.o
> wlesprm.o lesprm.o les2prm.o checksz.o ../lib/random.o
> ../lib/mexit.o ../lib/nxtsec.o
> -L/opt/intel/Compiler/11.1/072/mkl/lib/em64t -lvml -lmkl_lapack -lmkl
> -lguide -lpthread
> ld: cannot find -lvml
> make[1]: *** [addles] Error 1
> make[1]: Leaving directory `/opt/amber9/src/addles'
> make: *** [serial] Error 2
> =====
>
> The compiling of Amber 11 was succeeded. The intel compiler is version
> 11. Is it too new? Any advice?
>
> Sincerely,
>
> Yubo Fan
> Computational Chemistry and Drug Design Lab
> Bioengineering and Bioinformatics Program
> The Methodist Hospital Research Institute (TMHRI)
> 6565 Fannin St B5-022
> Houston, TX 77030
> Email: yfan.tmhs.org
> Phone: (713) 441-8681
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Tue Jun 29 2010 - 07:00:10 PDT
