[AMBER] regarding forcefield for rna

From: Asfa Ali <asfa.iisc.gmail.com>
Date: Wed, 9 Jun 2010 16:40:19 +0530


I am using AmberTools 1.3 along with Amber 9 package. I did MD for rna using
forcefields leaprc.ff99bsc0 as well as leaprc.ff99SB, however in both the
cases the rna structure opens into two strands at the beginning of the
production run (without any restraint).

What forcefield should I use in order to keep the structure intact?

Kindly help.

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Received on Wed Jun 09 2010 - 04:30:07 PDT
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