Have you watched how it comes apart dynamically? It seems odd
that the strands could move so far apart. It's as if there's
no water or somehow one strand is getting imaged away from the
other (but in this case they are adjacent across the box
boundary.
In general, I think I had problems with stability when I tried
simulating quadruplexes with loops, but never saw strands move
apart like that.
Bill
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 11 2010 - 08:30:04 PDT
