Re: [AMBER] regarding forcefield for rna

From: Bill Ross <ross.cgl.ucsf.EDU>
Date: Fri, 11 Jun 2010 08:14:08 -0700

Have you watched how it comes apart dynamically? It seems odd
that the strands could move so far apart. It's as if there's
no water or somehow one strand is getting imaged away from the
other (but in this case they are adjacent across the box

In general, I think I had problems with stability when I tried
simulating quadruplexes with loops, but never saw strands move
apart like that.


AMBER mailing list
Received on Fri Jun 11 2010 - 08:30:04 PDT
Custom Search