> I am using AmberTools 1.3 along with Amber 9 package. I did MD for rna using
> forcefields leaprc.ff99bsc0 as well as leaprc.ff99SB, however in both the
> cases the rna structure opens into two strands at the beginning of the
> production run (without any restraint).
Please include all mdin from equilibration and production.
Bill
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Received on Wed Jun 09 2010 - 10:30:04 PDT
