Amber Archive Nov 2000: By Thread

amber6.0 timing Andrew Petersen (Wed Nov 01 2000 - 06:36:31 PST)
- Re: amber6.0 timing jim caldwell (Wed Nov 01 2000 - 13:13:59 PST)
- Problems with memory for large systems Grzegorz Jezierski (Thu Nov 02 2000 - 01:14:36 PST)
- belly Andrew Aird (Thu Nov 02 2000 - 08:04:42 PST)
- shake/potential function Andrew Aird (Thu Nov 02 2000 - 08:08:23 PST)
  - re: shake/potential function Bill Ross (Thu Nov 02 2000 - 10:21:26 PST)
Re: your mail jim caldwell (Wed Nov 01 2000 - 07:56:51 PST)
RE: Elements Bayly, Chris (Wed Nov 01 2000 - 09:05:36 PST)
(no subject) Alessandra Ricca (Wed Nov 01 2000 - 09:17:57 PST)
- Re: your mail jim caldwell (Wed Nov 01 2000 - 11:17:25 PST)
- make install Margaret Doll (Wed Nov 01 2000 - 13:11:06 PST)
Re: make install Bill Ross (Thu Nov 02 2000 - 09:12:11 PST)
(no subject) Alessandra Ricca (Thu Nov 02 2000 - 09:35:49 PST)
Re: Using CARNAL to compute per-residue RMSD between PDB files Bill Ross (Thu Nov 02 2000 - 13:35:08 PST)
Re: finding average Thomas Cheatham (Fri Nov 03 2000 - 08:54:19 PST)
Sander/MPI/redimension Mihaly Mezei (Fri Nov 03 2000 - 10:28:27 PST)
Restraints in Amber6 Troy Bothwell (Fri Nov 03 2000 - 10:35:31 PST)
- RE: Restraints in Amber6 Troy Bothwell (Fri Nov 03 2000 - 11:33:45 PST)
- RE: Restraints in Amber6 Troy Bothwell (Fri Nov 03 2000 - 11:36:52 PST)
Re: Sander/MPI/redimension Michael Crowley (Fri Nov 03 2000 - 13:28:51 PST)
(no subject) Alessandra Ricca (Fri Nov 03 2000 - 16:23:45 PST)
(no subject) Bill Ross (Fri Nov 03 2000 - 17:56:12 PST)
Md at NVE A.Madhumalar (Sun Nov 05 2000 - 04:29:40 PST)
Re: Improper Dihedrals Bill Ross (Mon Nov 06 2000 - 15:54:20 PST)
(no subject) Alessandra Ricca (Mon Nov 06 2000 - 16:22:02 PST)
Re: leap problems Bill Ross (Mon Nov 06 2000 - 23:27:32 PST)
carbohydrate minimisation Mark Forster (Tue Nov 07 2000 - 09:06:33 PST)
Trying to compile Amber 6 on Intel/linux Leila Ayadi (Tue Nov 07 2000 - 09:25:40 PST)
- Re: Trying to compile Amber 6 on Intel/linux jim caldwell (Tue Nov 07 2000 - 11:33:17 PST)
Re: question David Case (Tue Nov 07 2000 - 11:55:47 PST)
OWFEG documentation Craig Marhefka (Tue Nov 07 2000 - 13:31:37 PST)
leap Nelson Brito (Wed Nov 08 2000 - 02:57:09 PST)
RE: Profect visualization jim caldwell (Wed Nov 08 2000 - 11:26:54 PST)
Re: Amber on Linux schayg_at_puskin-a206.sote.hu (Fri Nov 10 2000 - 05:33:47 PST)
Re: Cannoct connect to Amber Home Page Michael Cooney (Fri Nov 10 2000 - 09:44:54 PST)
PME group decomposition Andrew Petersen (Fri Nov 10 2000 - 09:46:19 PST)
PMF and PME with DNA David Bosch (Mon Nov 13 2000 - 01:51:47 PST)
- GB vs. GB/SA Andreas Svrcek-Seiler (Mon Nov 20 2000 - 06:09:08 PST)
  - Re: GB vs. GB/SA David Case (Tue Nov 21 2000 - 10:15:42 PST)
  - how to turn off self repulsion Marcela Madrid (Tue Nov 21 2000 - 11:39:45 PST)
  - Performance of Compaq ES vs IBM or ORIGIN servers Sam Andersen (Tue Nov 21 2000 - 18:54:39 PST)
    - Re: CCL:Performance of Compaq ES vs IBM or ORIGIN servers Nathalie Godbout (Tue Nov 28 2000 - 14:09:51 PST)
    - purine partial charges Andrew Petersen (Tue Nov 28 2000 - 14:40:07 PST)
    - missing parameters Andrew Aird (Wed Nov 29 2000 - 02:31:55 PST)
    - MM-PBSA miyasaki_at_haystack.lclark.edu (Wed Nov 29 2000 - 07:07:56 PST)
    - Re: MM-PBSA samantha hughes (Thu Nov 30 2000 - 00:05:22 PST)
    - PME GIOVA (Thu Nov 30 2000 - 06:01:11 PST)
    - TIP4P water Maria Kurnikova (Thu Nov 30 2000 - 07:36:25 PST)
    - missing angle parameters Andrew Aird (Thu Nov 30 2000 - 09:38:22 PST)
    - Acetonitrile Jose Ramon Blas (Thu Nov 30 2000 - 20:38:32 PST)
    - modeling GPCRs Giulio Rastelli (Wed Nov 29 2000 - 09:49:14 PST)
    - Parameter-Web Page Christian Pilger (Wed Nov 29 2000 - 12:10:19 PST)
  - Amber5 RESP (fwd) Simon Cross (Wed Nov 22 2000 - 05:55:10 PST)
- (no subject) Raja Swamynathan (Mon Nov 20 2000 - 07:30:03 PST)
- announcing mdxvu MD aanalysis code Mark Forster (Mon Nov 20 2000 - 08:30:58 PST)
- (no subject) Alessandra Ricca (Mon Nov 20 2000 - 14:14:44 PST)
- normal modes hermone_at_pegasus.arc.nasa.gov (Mon Nov 20 2000 - 15:51:55 PST)
- about PMF Kazunori Yamanaka (Mon Nov 20 2000 - 23:56:27 PST)
- error 76 Sara Madail (Tue Nov 21 2000 - 02:30:50 PST)
  - Re: error 76 Chuck Schneider (Tue Nov 21 2000 - 04:37:18 PST)
  - server down Michael Cooney (Tue Nov 21 2000 - 08:42:19 PST)
  - (no subject) robert (Tue Nov 21 2000 - 09:02:46 PST)
Question on Parallel Sander AMBER 6.0 Jennifer Bui (Mon Nov 13 2000 - 09:56:50 PST)
Re: Question on Parallel Sander AMBER 6.0 Michael Crowley (Mon Nov 13 2000 - 11:23:28 PST)
About Retinal K. Watanabe. (Mon Nov 13 2000 - 17:16:34 PST)
(no subject) Alessandra Ricca (Tue Nov 14 2000 - 15:12:00 PST)
- Re: your mail jim caldwell (Tue Nov 14 2000 - 16:29:29 PST)
- 2 questions mkf7_at_cornell.edu (Wed Nov 15 2000 - 15:00:54 PST)
  - Re: 2 questions David Case (Thu Nov 16 2000 - 07:55:35 PST)
    - Issues with Trunc. Oct. Robert Matthew Fesinmeyer (Thu Nov 16 2000 - 15:44:31 PST)
    - Re: Issues with Trunc. Oct. Pascal Bonnet (Fri Nov 17 2000 - 10:12:30 PST)
    - Re: 2 questions Simon Cross (Fri Nov 17 2000 - 01:40:57 PST)
  - (no subject) Joseph Nachman (Thu Nov 16 2000 - 08:13:48 PST)
    - Re: your mail Michael Cooney (Fri Nov 17 2000 - 08:56:30 PST)
    - (no subject) Joseph Nachman (Fri Nov 17 2000 - 08:59:23 PST)
Re: 2 questions Bill Ross (Wed Nov 15 2000 - 19:48:17 PST)
DNA dissociation in Ewald simulation Michael Cooney (Fri Nov 17 2000 - 13:39:05 PST)
Re: dynamics with different pH conditions David Case (Thu Nov 23 2000 - 12:02:46 PST)
Re: doubt in constant pressure simulations jim caldwell (Sat Nov 25 2000 - 10:15:15 PST)
File /usr/lib/libI77_mp.a Sanjeev B.S. (Sun Nov 26 2000 - 05:42:47 PST)
Additional Water Potentials Garrett W Grahek (Wed Nov 29 2000 - 14:20:33 PST)
Re: Additional Water Potentials Bill Ross (Wed Nov 29 2000 - 16:47:37 PST)

Amber Archive Nov 2000 By Thread