Amber Archive Feb 2026: by thread

[AMBER] PhD position: FZJ MD position in soil modelling Stephan Schott via AMBER (Mon Feb 09 2026 - 05:59:05 PST)
[AMBER] Amber Machine Learning and Free Energy Simulation Workshop (AMBER2026), July 13–17, 2026 Darrin York via AMBER (Fri Feb 13 2026 - 12:35:18 PST)
[AMBER] trajectory file generation from 2D remd (H+pH) Dulal Mondal via AMBER (Mon Feb 16 2026 - 06:53:02 PST)
- Re: [AMBER] trajectory file generation from 2D remd (H+pH) Daniel Roe via AMBER (Tue Feb 17 2026 - 03:19:31 PST)
- Re: [AMBER] trajectory file generation from 2D remd (H+pH) Daniel Roe via AMBER (Tue Feb 17 2026 - 13:25:01 PST)
- Re: [AMBER] trajectory file generation from 2D remd (H+pH) Daniel Roe via AMBER (Thu Feb 19 2026 - 07:36:59 PST)
  - Re: [AMBER] trajectory file generation from 2D remd (H+pH) Daniel Roe via AMBER (Thu Feb 26 2026 - 13:06:18 PST)
- Re: [AMBER] trajectory file generation from 2D remd (H+pH) Daniel Roe via AMBER (Thu Feb 26 2026 - 16:31:42 PST)
[AMBER] Building with cmake-4 Charo del Genio via AMBER (Mon Feb 16 2026 - 07:12:20 PST)
- Re: [AMBER] Building with cmake-4 Vedran Miletic via AMBER (Tue Feb 17 2026 - 00:16:36 PST)
[AMBER] Parameterization of Modified nucleotides Mandar Kulkarni via AMBER (Thu Feb 19 2026 - 00:17:09 PST)
[AMBER] Installing on amd mi300x Brian Cunningham via AMBER (Thu Feb 19 2026 - 03:02:41 PST)
- Re: [AMBER] Installing on amd mi300x Bauer, Paul via AMBER (Thu Feb 19 2026 - 03:16:24 PST)
  - Re: [AMBER] Installing on amd mi300x Oscar Conchillo-Solé via AMBER (Thu Feb 19 2026 - 03:22:16 PST)
    - Re: [AMBER] Installing on amd mi300x Bauer, Paul via AMBER (Thu Feb 19 2026 - 03:30:58 PST)
    - Re: [AMBER] Installing on amd mi300x David A Case via AMBER (Sun Feb 22 2026 - 14:22:07 PST)
[AMBER] Parametrization of covalent ligands in protein MD Jefta Wucherpfennig via AMBER (Thu Feb 19 2026 - 04:57:55 PST)
- Re: [AMBER] Parametrization of covalent ligands in protein MD Dr. Anselm Horn via AMBER (Thu Feb 26 2026 - 05:13:00 PST)
[AMBER] Incorrect energy and gradients with IPOL=4 William James Glover via AMBER (Thu Feb 19 2026 - 05:01:30 PST)
[AMBER] MM energy with certain zero torsion parameters Mandar Kulkarni via AMBER (Sat Feb 21 2026 - 03:38:46 PST)
- Re: [AMBER] MM energy with certain zero torsion parameters Carlos Simmerling via AMBER (Sat Feb 21 2026 - 04:23:26 PST)
  - Re: [AMBER] MM energy with certain zero torsion parameters Mandar Kulkarni via AMBER (Sat Feb 21 2026 - 04:29:11 PST)
    - Re: [AMBER] MM energy with certain zero torsion parameters David A Case via AMBER (Sun Feb 22 2026 - 14:34:26 PST)
- Re: [AMBER] MM energy with certain zero torsion parameters David A Case via AMBER (Mon Feb 23 2026 - 09:24:04 PST)
[AMBER] [AMBER Help] Illegal memory access (kNLSkinTest) at NVT to NPT transition - peptide-MHC/β2M complex (ff19SB+OPC) Arun Gupta via AMBER (Thu Feb 26 2026 - 04:45:45 PST)
[AMBER] Distortion of structure Priyasha Majee via AMBER (Thu Feb 26 2026 - 22:33:29 PST)
- Re: [AMBER] Distortion of structure Elvis Martis via AMBER (Thu Feb 26 2026 - 22:44:05 PST)
- Re: [AMBER] Distortion of structure David A Case via AMBER (Fri Feb 27 2026 - 08:12:58 PST)
[AMBER] AmberTools25 + Amber24 installation Pertschy, Florian via AMBER (Fri Feb 27 2026 - 04:00:02 PST)
- Re: [AMBER] AmberTools25 + Amber24 installation David A Case via AMBER (Fri Feb 27 2026 - 08:05:48 PST)

Amber Archive Feb 2026 by thread