Amber Archive Sep 2025 by messages with attachments

72 messages: Starting Tue Sep 02 2025 - 10:00:03 PDT, Ending Tue Sep 30 2025 - 16:00:02 PDT
This period: Most recent messages
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[AMBER] Difference in cpptraj output structures between NVT equilibration and NPT production runs YASHIKA . via AMBER (Wed Sep 03 2025 - 22:25:42 PDT)
1. production.jpeg (145402 bytes)
2. equilibration.jpeg (199400 bytes)
[AMBER] secondary structure analysis ankita mehta via AMBER (Thu Sep 04 2025 - 09:11:22 PDT)
1. dssp.py (7164 bytes)
Re: [AMBER] KeyError of chargedict in MCPB's step 1 Li, Zhen via AMBER (Thu Sep 04 2025 - 09:55:28 PDT)
1. image.png (98986 bytes)
Re: [AMBER] KeyError of chargedict in MCPB's step 1 Ge Song via AMBER (Thu Sep 04 2025 - 10:18:06 PDT)
1. image.png (98986 bytes)
Re: [AMBER] KeyError of chargedict in MCPB's step 1 Li, Zhen via AMBER (Thu Sep 04 2025 - 11:48:26 PDT)
1. image.png (98986 bytes)
Re: [AMBER] KeyError of chargedict in MCPB's step 1 Ge Song via AMBER (Thu Sep 04 2025 - 12:09:02 PDT)
1. image.png (98986 bytes)
Re: [AMBER] KeyError of chargedict in MCPB's step 1 Li, Zhen via AMBER (Thu Sep 04 2025 - 16:23:22 PDT)
1. image.png (98986 bytes)
2. image.png (173303 bytes)
Re: [AMBER] ASH (protonated Asp) at N terminus missing NH3+ Carlos Simmerling via AMBER (Wed Sep 10 2025 - 09:28:44 PDT)
1. 09-10_at_8.52.56___AM.png (326975 bytes)
[AMBER] job run error Dulal Mondal via AMBER (Fri Sep 12 2025 - 04:07:29 PDT)
1. error_27779.txt (1045 bytes)
2. output_27779.txt (1785 bytes)
3. mdout.rep.001 (11382 bytes)
Re: [AMBER] Error in Steered QM/MM MD Ramdhan,Peter A via AMBER (Fri Sep 19 2025 - 05:57:50 PDT)
1. byd4nzgv.png (50129 bytes)
Re: [AMBER] Error in Steered QM/MM MD Kriti Shukla via AMBER (Fri Sep 19 2025 - 06:02:10 PDT)
1. byd4nzgv.png (50129 bytes)
[AMBER] Error in nad+ Kapali Suri via AMBER (Sun Sep 21 2025 - 13:59:12 PDT)
1. nad.frcmod (1296 bytes)
2. nad.mol2 (6701 bytes)
3. nad.prepi (5827 bytes)
[AMBER] Problems changing LJ distances by atom type. James Ross via AMBER (Tue Sep 23 2025 - 02:08:47 PDT)
1. gdq4cvgq.png (528 bytes)
Re: [AMBER] miniconda error with Amber24 Skanda Sastry via AMBER (Thu Sep 25 2025 - 16:44:08 PDT)
1. lmod_modules.txt (1621 bytes)
2. amber.yml (7425 bytes)