Amber Archive Jun 2025: by thread

[AMBER] RAMD Dhananjay via AMBER (Tue Jun 03 2025 - 19:42:35 PDT)
[AMBER] spc/fw water model Dulal Mondal via AMBER (Wed Jun 04 2025 - 08:00:55 PDT)
- Re: [AMBER] spc/fw water model Timothy Giese via AMBER (Wed Jun 04 2025 - 08:58:50 PDT)
  - Re: [AMBER] spc/fw water model Dulal Mondal via AMBER (Wed Jun 04 2025 - 10:43:41 PDT)
    - Re: [AMBER] spc/fw water model Dulal Mondal via AMBER (Wed Jun 04 2025 - 23:53:04 PDT)
[AMBER] Possible bug in restraint mask parsing during minimization in AMBER24 (works in AMBER22) Pedro Martínez Zaragoza via AMBER (Fri Jun 06 2025 - 03:30:11 PDT)
- Re: [AMBER] Possible bug in restraint mask parsing during minimization in AMBER24 (works in AMBER22) Adrian Roitberg via AMBER (Fri Jun 06 2025 - 11:26:41 PDT)
[AMBER] Steered MD with two variables Kriti Shukla via AMBER (Fri Jun 06 2025 - 22:03:06 PDT)
[AMBER] Segmentation fault occurred when using Amber with Plumed Jiahua Deng via AMBER (Sun Jun 08 2025 - 20:44:35 PDT)
[AMBER] whether the PM6-DH+ method supports cuda acceleration xurui via AMBER (Mon Jun 09 2025 - 07:06:16 PDT)
- Re: [AMBER] whether the PM6-DH+ method supports cuda acceleration David A Case via AMBER (Mon Jun 09 2025 - 20:39:27 PDT)
[AMBER] Segmentation fault when running TI with lambda scheduling for restraints on AMBER 24 (AMD GPU) Yuxuan Zhuang via AMBER (Mon Jun 09 2025 - 12:09:14 PDT)
[AMBER] errors in total energy Sudipti Priyadarsinee via AMBER (Tue Jun 10 2025 - 06:29:07 PDT)
- Re: [AMBER] errors in total energy Elvis Martis via AMBER (Tue Jun 10 2025 - 06:40:21 PDT)
- Re: [AMBER] errors in total energy Carlos Simmerling via AMBER (Tue Jun 10 2025 - 07:17:30 PDT)
- Re: [AMBER] errors in total energy Daniel Roe via AMBER (Thu Jun 12 2025 - 08:18:54 PDT)
[AMBER] Accelerating NMA Calculations in MMPBSA.py for Large Number of Structures Rahul Singal via AMBER (Tue Jun 10 2025 - 23:42:25 PDT)
- Re: [AMBER] Accelerating NMA Calculations in MMPBSA.py for Large Number of Structures David A Case via AMBER (Wed Jun 11 2025 - 07:45:05 PDT)
[AMBER] TIP3P Water issue with MCPB.py Jasmin Güven via AMBER (Wed Jun 11 2025 - 07:44:40 PDT)
- Re: [AMBER] TIP3P Water issue with MCPB.py Li, Zhen via AMBER (Wed Jun 11 2025 - 11:25:21 PDT)
  - Re: [AMBER] TIP3P Water issue with MCPB.py Jasmin Güven via AMBER (Wed Jun 11 2025 - 11:41:19 PDT)
[AMBER] Can cpptraj calculate electron density for molecular surface? Hòa Lê via AMBER (Wed Jun 11 2025 - 20:40:29 PDT)
[AMBER] Illegal Memory Access Oke, Elizabeth Damilola via AMBER (Thu Jun 12 2025 - 08:30:33 PDT)
- Re: [AMBER] Illegal Memory Access Daniel Roe via AMBER (Thu Jun 12 2025 - 08:47:19 PDT)
[AMBER] gaff2.dat Kelly, Katie Lynette via AMBER (Thu Jun 12 2025 - 08:43:31 PDT)
- Re: [AMBER] gaff2.dat Christina Bergonzo via AMBER (Thu Jun 12 2025 - 08:56:50 PDT)

Amber Archive Jun 2025 by thread