Hi Sunita,
Actually, you bypassed downloading miniconda, and tried to compile with an
older version of python. This might create problems, as the error message
says.
Install the python-2.7 and this error will go away, however, the miniconda
issue still persists.
Best Regards
On Fri, 9 Aug 2019 at 14:29, Sunita Patel <sunita.patel.cbs.ac.in> wrote:
> The problem is solved by doing configuration in the following way.
> ./configure --with-python /usr/bin/python/ gnu
>
> But getting another problem during compilation. I checked my python version
> which is 2.6.6. I will try with Phython 2.7 now.
>
> ===============
> You must have at least Python 2.7 for ParmEd to work correctly.
> make[2]: *** [parmed] Error 1
> make[2]: Leaving directory
> `/home/external/cbs/sunitap/softwares/amber18/AmberTools/src'
> make[1]: *** [serial] Error 2
> make[1]: Leaving directory
> `/home/external/cbs/sunitap/softwares/amber18/AmberTools/src'
> make: *** [install] Error 2
> ==============
> [sunitap.ycn2 amber18]$ python --version
> Python 2.6.6
>
> Sunita
>
> On Fri, Aug 9, 2019 at 12:13 PM Sunita Patel <sunita.patel.cbs.ac.in>
> wrote:
>
> > Dear AMBER-users,
> >
> > I am too having similar problem during installation of AMBER18 on two
> > different servers. I also tried to install in different times. Still
> > getting the similar problem.
> > Please suggest the solution.
> >
> > Thanks in advance for your help.
> > Sunita
> >
> > ===============================
> > This script will download and install a version of Python compatible
> > with every component of AmberTools and install all required and optional
> > prerequisites. The Python distribution is downloaded for your operating
> > system from Miniconda.
> >
> > Downloading Python 2.7 Miniconda
> > Detected Linux kernel. Downloading the Linux installer
> > Downloading the latest Miniconda distribution
> > Detected 64-bit Linux
> > --2019-08-09 12:13:06--
> > https://repo.continuum.io/miniconda/Miniconda2-4.3.21-Linux-x86_64.sh
> > Resolving repo.continuum.io... failed: Name or service not known.
> > wget: unable to resolve host address `repo.continuum.io'
> > Problem installing Miniconda... see error above.
> > Configure failed due to the errors above!
> >
> >
> > On Thu, Aug 8, 2019 at 9:11 PM David A Case <david.case.rutgers.edu>
> > wrote:
> >
> >> On Thu, Aug 08, 2019, Elvis Martis wrote:
> >>
> >> >I am trying to install AMBERTools19 and facing a problem while
> installing
> >> >miniconda.
> >> >Connecting to repo.continuum.io|104.18.201.79|:443... connected.
> >> >ERROR: certificate common name “ssl468915.cloudflaressl.com” doesn’t
> >> match
> >> >requested host name “repo.continuum.io”.
> >> >To connect to repo.continuum.io insecurely, use
> >> ‘--no-check-certificate’.
> >>
> >> Please try again after a while. The problem arises from continuum, and
> >> we have occasionally seen this before.
> >>
> >> ...dac
> >>
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >
> _______________________________________________
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>
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Received on Fri Aug 09 2019 - 04:00:02 PDT
