Dear All,
During the simulation I can see quite a lot of changes in the position of
my TM helix immersed in the lipid bilayer, so I would like to calculate the
tilt angle between the transmembrane helix principal axis and the vector
along the Z-axis. However, I'm not so sure how to do that...
As a principal axis of TM helix I mean the C-alpha atoms from the helix
(which is 30 residues) and I suppose that I should somehow use the vector
command from cpptraj?
Do you have any suggestions?
Thank you in advance
Maria
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Received on Fri Aug 09 2019 - 01:30:02 PDT
