Re: [AMBER] calculating force correlation in trajectory

From: David A Case <>
Date: Thu, 28 Jun 2018 18:04:51 -0400

On Thu, Jun 28, 2018, Lod King wrote:

> I am analyzing how the force in residue ABC is propagated and affected by
> the neighboring residues, the motion between residue ABC and
> residue DEFG...

Probably the best thing to do is to find a published paper that reports
the sort of analysis you would like to do (or something close to it).
Then look at the methods section to see how it was done.

I'm doubtful that analyzing forces will do you much good. Looking for
"the motion between residue ABC and residue DEFG" sounds like something
that involves analysis of coordinates, not forces.

But maybe someone on the list knows of analysis that sounds like what
you describe above.


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Received on Thu Jun 28 2018 - 15:30:01 PDT
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