Hi,
Yes, raw output for the 'hbond' series data is 1 for present (i.e. the
distance and angle cutoffs are satisfied for that frame) and 0 for not
present.
-Dan
On Thu, Jun 7, 2018 at 7:33 AM, Rana Rehan Khalid <rrkhalid.umich.edu> wrote:
> Dear Amber users
>
> I have a little confusion about h-bond occupancy plot labels, As I know
> that X-axis represents the Time ns, Y-axis represents the H-bond occupancy
> in yellow color. But what exactly the meaning of color ranges label range
> (0-1) while on plot we only saw the yellow and black. Is this means 0 = no
> H-BOND color black, and 1 = H-bond present color yellow? Actually, I want
> to label y-axis, what will be the most appropriate label for Y-axis. I am
> using Y-axis title H-BOND Occupancy now.
>
> Thanks
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Received on Mon Jun 11 2018 - 12:30:02 PDT
