hi
do you have any python distribution already installed in your computer?
if so, you can use the "--with-python /path/to/you/python" for the
configure command
e.g; ./configure --with-python /usr/bin/python gnu
PS: Be sure to have numpy, matplotliblib, scipy too.
Hope this help.
Hai
On Tue, Jan 16, 2018 at 11:52 PM, Bhargava Sai M <sbhargava.ibab.ac.in>
wrote:
>
>
> I am trying to install AmberTools17 on my Dekstop running Ubuntu 16.04 and
> using the institute proxy network. I am following all instructions on the
> guide. However when installing miniconda the following error comes:
>
> Exception:
> Traceback (most recent call last):
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/basecommand.py",
> line 215, in main
> status = self.run(options, args)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/commands/install.py",
> line 335, in run
> wb.build(autobuilding=True)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/wheel.py",
> line 749, in build
> self.requirement_set.prepare_files(self.finder)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/req/req_set.py",
> line 380, in prepare_files
> ignore_dependencies=self.ignore_dependencies))
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/req/req_set.py",
> line 487, in _prepare_file
> req_to_install, finder)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/req/req_set.py",
> line 428, in _check_skip_installed
> req_to_install, upgrade_allowed)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
> line 465, in find_requirement
> all_candidates = self.find_all_candidates(req.name)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
> line 423, in find_all_candidates
> for page in self._get_pages(url_locations, project_name):
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
> line 568, in _get_pages
> page = self._get_page(location)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
> line 683, in _get_page
> return HTMLPage.get_page(link, session=self.session)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
> line 792, in get_page
> "Cache-Control": "max-age=600",
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/sessions.py",
> line 488, in get
> return self.request('GET', url, **kwargs)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/download.py",
> line 386, in request
> return super(PipSession, self).request(method, url, *args, **kwargs)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/sessions.py",
> line 475, in request
> resp = self.send(prep, **send_kwargs)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/sessions.py",
> line 596, in send
> r = adapter.send(request, **kwargs)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/cachecontrol/adapter.py",
> line 47, in send
> resp = super(CacheControlAdapter, self).send(request, **kw)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/adapters.py",
> line 390, in send
> conn = self.get_connection(request.url, proxies)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/adapters.py",
> line 290, in get_connection
> proxy_manager = self.proxy_manager_for(proxy)
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/adapters.py",
> line 184, in proxy_manager_for
> **proxy_kwargs
> File
> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
> pip/_vendor/requests/adapters.py",
> line 43, in SOCKSProxyManager
> raise InvalidSchema("Missing dependencies for SOCKS support.")
> InvalidSchema: Missing dependencies for SOCKS support.
>
> Ignoring the error and going forward, when i enter "make test", the error
> " Could not import Amber Python modules!" comes...
>
> Could anyone guide me on this ?
>
> with respect and regards...
>
> Bhargava Sai Mukkirla,
> Junior Research Fellow,
> Institute of Bioinformatics and Applied Biotechnology (IBAB),
> Biotech Park, Electronics City Phase I,
> Bengaluru, India - 560 100
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Wed Jan 17 2018 - 15:00:04 PST
