Thank You Hai,
That solved the problem.
> hi
>
> do you have any python distribution already installed in your computer?
>
> if so, you can use the "--with-python /path/to/you/python" for the
> configure command
>
> e.g; ./configure --with-python /usr/bin/python gnu
>
> PS: Be sure to have numpy, matplotliblib, scipy too.
> Hope this help.
>
> Hai
>
> On Tue, Jan 16, 2018 at 11:52 PM, Bhargava Sai M <sbhargava.ibab.ac.in>
> wrote:
>
>>
>>
>> I am trying to install AmberTools17 on my Dekstop running Ubuntu 16.04
>> and
>> using the institute proxy network. I am following all instructions on
>> the
>> guide. However when installing miniconda the following error comes:
>>
>> Exception:
>> Traceback (most recent call last):
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/basecommand.py",
>> line 215, in main
>> status = self.run(options, args)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/commands/install.py",
>> line 335, in run
>> wb.build(autobuilding=True)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/wheel.py",
>> line 749, in build
>> self.requirement_set.prepare_files(self.finder)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/req/req_set.py",
>> line 380, in prepare_files
>> ignore_dependencies=self.ignore_dependencies))
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/req/req_set.py",
>> line 487, in _prepare_file
>> req_to_install, finder)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/req/req_set.py",
>> line 428, in _check_skip_installed
>> req_to_install, upgrade_allowed)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
>> line 465, in find_requirement
>> all_candidates = self.find_all_candidates(req.name)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
>> line 423, in find_all_candidates
>> for page in self._get_pages(url_locations, project_name):
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
>> line 568, in _get_pages
>> page = self._get_page(location)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
>> line 683, in _get_page
>> return HTMLPage.get_page(link, session=self.session)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
>> line 792, in get_page
>> "Cache-Control": "max-age=600",
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/sessions.py",
>> line 488, in get
>> return self.request('GET', url, **kwargs)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/download.py",
>> line 386, in request
>> return super(PipSession, self).request(method, url, *args, **kwargs)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/sessions.py",
>> line 475, in request
>> resp = self.send(prep, **send_kwargs)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/sessions.py",
>> line 596, in send
>> r = adapter.send(request, **kwargs)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/cachecontrol/adapter.py",
>> line 47, in send
>> resp = super(CacheControlAdapter, self).send(request, **kw)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/adapters.py",
>> line 390, in send
>> conn = self.get_connection(request.url, proxies)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/adapters.py",
>> line 290, in get_connection
>> proxy_manager = self.proxy_manager_for(proxy)
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/adapters.py",
>> line 184, in proxy_manager_for
>> **proxy_kwargs
>> File
>> "/home/ibab/amber16/miniconda/lib/python2.7/site-packages/
>> pip/_vendor/requests/adapters.py",
>> line 43, in SOCKSProxyManager
>> raise InvalidSchema("Missing dependencies for SOCKS support.")
>> InvalidSchema: Missing dependencies for SOCKS support.
>>
>> Ignoring the error and going forward, when i enter "make test", the
>> error
>> " Could not import Amber Python modules!" comes...
>>
>> Could anyone guide me on this ?
>>
>> with respect and regards...
>>
>> Bhargava Sai Mukkirla,
>> Junior Research Fellow,
>> Institute of Bioinformatics and Applied Biotechnology (IBAB),
>> Biotech Park, Electronics City Phase I,
>> Bengaluru, India - 560 100
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
Bhargava Sai Mukkirla,
Junior Research Fellow,
Institute of Bioinformatics and Applied Biotechnology (IBAB),
Biotech Park, Electronics City Phase I,
Bengaluru, India - 560 100
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Received on Wed Jan 17 2018 - 21:30:02 PST
