I am trying to install AmberTools17 on my Dekstop running Ubuntu 16.04 and
using the institute proxy network. I am following all instructions on the
guide. However when installing miniconda the following error comes:
Exception:
Traceback (most recent call last):
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/basecommand.py",
line 215, in main
status = self.run(options, args)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/commands/install.py",
line 335, in run
wb.build(autobuilding=True)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/wheel.py",
line 749, in build
self.requirement_set.prepare_files(self.finder)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/req/req_set.py",
line 380, in prepare_files
ignore_dependencies=self.ignore_dependencies))
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/req/req_set.py",
line 487, in _prepare_file
req_to_install, finder)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/req/req_set.py",
line 428, in _check_skip_installed
req_to_install, upgrade_allowed)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
line 465, in find_requirement
all_candidates = self.find_all_candidates(req.name)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
line 423, in find_all_candidates
for page in self._get_pages(url_locations, project_name):
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
line 568, in _get_pages
page = self._get_page(location)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
line 683, in _get_page
return HTMLPage.get_page(link, session=self.session)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/index.py",
line 792, in get_page
"Cache-Control": "max-age=600",
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/sessions.py",
line 488, in get
return self.request('GET', url, **kwargs)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/download.py",
line 386, in request
return super(PipSession, self).request(method, url, *args, **kwargs)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/sessions.py",
line 475, in request
resp = self.send(prep, **send_kwargs)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/sessions.py",
line 596, in send
r = adapter.send(request, **kwargs)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/cachecontrol/adapter.py",
line 47, in send
resp = super(CacheControlAdapter, self).send(request, **kw)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/adapters.py",
line 390, in send
conn = self.get_connection(request.url, proxies)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/adapters.py",
line 290, in get_connection
proxy_manager = self.proxy_manager_for(proxy)
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/adapters.py",
line 184, in proxy_manager_for
**proxy_kwargs
File
"/home/ibab/amber16/miniconda/lib/python2.7/site-packages/pip/_vendor/requests/adapters.py",
line 43, in SOCKSProxyManager
raise InvalidSchema("Missing dependencies for SOCKS support.")
InvalidSchema: Missing dependencies for SOCKS support.
Ignoring the error and going forward, when i enter "make test", the error
" Could not import Amber Python modules!" comes...
Could anyone guide me on this ?
with respect and regards...
Bhargava Sai Mukkirla,
Junior Research Fellow,
Institute of Bioinformatics and Applied Biotechnology (IBAB),
Biotech Park, Electronics City Phase I,
Bengaluru, India - 560 100
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Received on Tue Jan 16 2018 - 21:00:02 PST
